miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 2004 0.66 0.865193
Target:  5'- -aCUCGCCCGcgUCGCCugaGCCGgc-ACCa -3'
miRNA:   3'- uaGAGCGGGC--AGUGG---CGGCagaUGGa -5'
8954 5' -59.4 NC_002512.2 + 23679 0.66 0.865193
Target:  5'- uUCaaGCCCcagCACCGCCG-CUGCUUc -3'
miRNA:   3'- uAGagCGGGca-GUGGCGGCaGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 56152 0.66 0.865193
Target:  5'- uGUCUCaCCUGUC-CCGuuGUCUGUCUc -3'
miRNA:   3'- -UAGAGcGGGCAGuGGCggCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 197134 0.66 0.865193
Target:  5'- cAUCggCGCCCugggcuacaagGUCGCCacgGCCGUCUuCCa -3'
miRNA:   3'- -UAGa-GCGGG-----------CAGUGG---CGGCAGAuGGa -5'
8954 5' -59.4 NC_002512.2 + 1693 0.66 0.857928
Target:  5'- uAUC-CGCCCGUCcCCGCU-UCU-CCUg -3'
miRNA:   3'- -UAGaGCGGGCAGuGGCGGcAGAuGGA- -5'
8954 5' -59.4 NC_002512.2 + 103227 0.66 0.857928
Target:  5'- -gCUCGC--GUCGCCGCCcGUCgacgGCCg -3'
miRNA:   3'- uaGAGCGggCAGUGGCGG-CAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 126197 0.66 0.857928
Target:  5'- cUCcCGCCgCGUcCGCCGCCcUCUGCg- -3'
miRNA:   3'- uAGaGCGG-GCA-GUGGCGGcAGAUGga -5'
8954 5' -59.4 NC_002512.2 + 99619 0.66 0.857928
Target:  5'- ---gCGCUCGUCGCgGUCGUCgcCCUc -3'
miRNA:   3'- uagaGCGGGCAGUGgCGGCAGauGGA- -5'
8954 5' -59.4 NC_002512.2 + 108954 0.66 0.85348
Target:  5'- -cCUUGCCCGUCGggucgcCCggguccgucagcaggGCCGUgUACCUg -3'
miRNA:   3'- uaGAGCGGGCAGU------GG---------------CGGCAgAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 2209 0.66 0.850478
Target:  5'- cGUCUCGgucgCCGgcggCGCCGCCGcUCUuCCUc -3'
miRNA:   3'- -UAGAGCg---GGCa---GUGGCGGC-AGAuGGA- -5'
8954 5' -59.4 NC_002512.2 + 206543 0.66 0.850477
Target:  5'- -gCUCGCCgcacuCGUaCACCGCCGgcgGCCc -3'
miRNA:   3'- uaGAGCGG-----GCA-GUGGCGGCagaUGGa -5'
8954 5' -59.4 NC_002512.2 + 21086 0.66 0.842847
Target:  5'- gGUCcCGCuCCGgggCgACCGCCGUCUcagacgcggACCUu -3'
miRNA:   3'- -UAGaGCG-GGCa--G-UGGCGGCAGA---------UGGA- -5'
8954 5' -59.4 NC_002512.2 + 218606 0.66 0.842846
Target:  5'- gGUCUCGCCCGcggacUCGaaggaCGCgCGUCgggACCc -3'
miRNA:   3'- -UAGAGCGGGC-----AGUg----GCG-GCAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 137126 0.66 0.835042
Target:  5'- cUCUUGUaguuCCGUCGcCCGUCGUCggcGCCa -3'
miRNA:   3'- uAGAGCG----GGCAGU-GGCGGCAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 144054 0.66 0.835042
Target:  5'- ---cCGaCCCGUCAUCGCCGUU--CCUu -3'
miRNA:   3'- uagaGC-GGGCAGUGGCGGCAGauGGA- -5'
8954 5' -59.4 NC_002512.2 + 203187 0.66 0.835041
Target:  5'- ---aCGCCagccagGUCACCGCCagcacggcguacGUCUGCCg -3'
miRNA:   3'- uagaGCGGg-----CAGUGGCGG------------CAGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 99714 0.66 0.835041
Target:  5'- -cCUCGUCCG-CGCCGUCGcggGCCg -3'
miRNA:   3'- uaGAGCGGGCaGUGGCGGCagaUGGa -5'
8954 5' -59.4 NC_002512.2 + 128378 0.66 0.835041
Target:  5'- -cCUC-CCCGUCGCCGgcggcggaccCCGUCUcgaGCCc -3'
miRNA:   3'- uaGAGcGGGCAGUGGC----------GGCAGA---UGGa -5'
8954 5' -59.4 NC_002512.2 + 116014 0.67 0.827068
Target:  5'- cUUUCGCUcggaccgcuaCGUCAUgGCCGUCUugCc -3'
miRNA:   3'- uAGAGCGG----------GCAGUGgCGGCAGAugGa -5'
8954 5' -59.4 NC_002512.2 + 132104 0.67 0.827068
Target:  5'- gAUCUCGUCCGUCuCgGCCGgcagcGCCc -3'
miRNA:   3'- -UAGAGCGGGCAGuGgCGGCaga--UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.