miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 3' -58.9 NC_002512.2 + 135165 0.66 0.890089
Target:  5'- gGCCAgcgaacgCCUgCGCCCCGCGC----ACCGc -3'
miRNA:   3'- -UGGUa------GGA-GUGGGGCGCGcugaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 140204 0.66 0.890089
Target:  5'- gACCGUacaUCUCGCCCCGC-CGcCUucgcACCGc -3'
miRNA:   3'- -UGGUA---GGAGUGGGGCGcGCuGA----UGGU- -5'
8956 3' -58.9 NC_002512.2 + 1822 0.66 0.890089
Target:  5'- cCCGUCgUC-UCCCGCGCcGCaGCCGu -3'
miRNA:   3'- uGGUAGgAGuGGGGCGCGcUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 123635 0.66 0.890089
Target:  5'- gACCucacCCUCACCCggguauauaaCGcCGCGGCgGCCGg -3'
miRNA:   3'- -UGGua--GGAGUGGG----------GC-GCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 219167 0.66 0.883536
Target:  5'- cGCCGaggaCUUCGCCgCCGU-CGGCUACCGc -3'
miRNA:   3'- -UGGUa---GGAGUGG-GGCGcGCUGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 173504 0.66 0.883536
Target:  5'- cUCGaCCUCGCCCCGC-CGuCcGCCGa -3'
miRNA:   3'- uGGUaGGAGUGGGGCGcGCuGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 48476 0.66 0.883536
Target:  5'- gGCCAUCCUgaacgCGuCCCCG-GCGGagGCCAg -3'
miRNA:   3'- -UGGUAGGA-----GU-GGGGCgCGCUgaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 178684 0.66 0.883536
Target:  5'- gACaCGUCCgagGCCCgcaGCGCGGCcGCCGc -3'
miRNA:   3'- -UG-GUAGGag-UGGGg--CGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 167700 0.66 0.883536
Target:  5'- aACCuaCCUCACCUgGCG-GuCUACCGg -3'
miRNA:   3'- -UGGuaGGAGUGGGgCGCgCuGAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 21127 0.66 0.876779
Target:  5'- gGCCuuccgCUUCGgcuUCCUGgGCGACUGCCu -3'
miRNA:   3'- -UGGua---GGAGU---GGGGCgCGCUGAUGGu -5'
8956 3' -58.9 NC_002512.2 + 21083 0.66 0.876779
Target:  5'- gGCgGUCC-CGCUCCgGgGCGACcGCCGu -3'
miRNA:   3'- -UGgUAGGaGUGGGG-CgCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 20843 0.66 0.876779
Target:  5'- aGCCGUCggaaUCGCUCCGggaCGCGGCcGCCc -3'
miRNA:   3'- -UGGUAGg---AGUGGGGC---GCGCUGaUGGu -5'
8956 3' -58.9 NC_002512.2 + 221500 0.66 0.876779
Target:  5'- -gCGUCCUauuuUCCUGCGCGGC-GCCGc -3'
miRNA:   3'- ugGUAGGAgu--GGGGCGCGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 143210 0.66 0.876779
Target:  5'- uGCCGUCC-C-CCUCGCGCgccguccgcucgGACgcgGCCAc -3'
miRNA:   3'- -UGGUAGGaGuGGGGCGCG------------CUGa--UGGU- -5'
8956 3' -58.9 NC_002512.2 + 10195 0.66 0.876092
Target:  5'- cGCCGacgcuccUCCUCGuCCUCGgGCGGCgcgcCCAg -3'
miRNA:   3'- -UGGU-------AGGAGU-GGGGCgCGCUGau--GGU- -5'
8956 3' -58.9 NC_002512.2 + 131702 0.66 0.876092
Target:  5'- cGCCAUCCcucggacggUCGCCgCGCccguccagacgcgGCGACcGCCGg -3'
miRNA:   3'- -UGGUAGG---------AGUGGgGCG-------------CGCUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 172260 0.66 0.876092
Target:  5'- uGCUcgCCUCACgCCCGCuCGGucgcccgggacauCUGCCGu -3'
miRNA:   3'- -UGGuaGGAGUG-GGGCGcGCU-------------GAUGGU- -5'
8956 3' -58.9 NC_002512.2 + 104680 0.66 0.869822
Target:  5'- gGCguUCCUC-CUCCGCGUccugGACgGCCAc -3'
miRNA:   3'- -UGguAGGAGuGGGGCGCG----CUGaUGGU- -5'
8956 3' -58.9 NC_002512.2 + 22887 0.66 0.869822
Target:  5'- cACCAUgCUgACCCCGCG-GGCcACgGg -3'
miRNA:   3'- -UGGUAgGAgUGGGGCGCgCUGaUGgU- -5'
8956 3' -58.9 NC_002512.2 + 135251 0.66 0.869822
Target:  5'- gGCCGUCgUcCGCgCCGCGCucGACgagGCCu -3'
miRNA:   3'- -UGGUAGgA-GUGgGGCGCG--CUGa--UGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.