Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 212199 | 1.11 | 0.004539 |
Target: 5'- gUCACGCUGCUCGACGAGGAGAUCGUCg -3' miRNA: 3'- -AGUGCGACGAGCUGCUCCUCUAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 123018 | 0.83 | 0.235443 |
Target: 5'- ---gGCUGCUcgugcgCGACGAGGAGGUCGUCg -3' miRNA: 3'- agugCGACGA------GCUGCUCCUCUAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 139637 | 0.8 | 0.362361 |
Target: 5'- cCACGCacUGCUCGACGAGG-GAcgccaacaUCGUCg -3' miRNA: 3'- aGUGCG--ACGAGCUGCUCCuCU--------AGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 128367 | 0.78 | 0.473095 |
Target: 5'- gUCGCGCggugcccccugUGCUaCGACGGGGAGAgcgacUCGUCc -3' miRNA: 3'- -AGUGCG-----------ACGA-GCUGCUCCUCU-----AGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 87411 | 0.76 | 0.539314 |
Target: 5'- -gGC-CUGacaUCGugGGGGAGAUCGUCa -3' miRNA: 3'- agUGcGACg--AGCugCUCCUCUAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 100276 | 0.75 | 0.638376 |
Target: 5'- -gACGgaGCUCGGCGAGcGGGGcgaguUCGUCg -3' miRNA: 3'- agUGCgaCGAGCUGCUC-CUCU-----AGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 169003 | 0.73 | 0.736815 |
Target: 5'- gUCGCGCgccgGCUCGGCGAuccGGGcGggCGUCc -3' miRNA: 3'- -AGUGCGa---CGAGCUGCU---CCU-CuaGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 83206 | 0.73 | 0.736815 |
Target: 5'- cCGCGC-GCggGGCGGGGGGAgCGUCg -3' miRNA: 3'- aGUGCGaCGagCUGCUCCUCUaGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 97497 | 0.73 | 0.736815 |
Target: 5'- aUCACGUUcGUccacgacuUCcGCGGGGAGGUCGUCg -3' miRNA: 3'- -AGUGCGA-CG--------AGcUGCUCCUCUAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 130550 | 0.73 | 0.727223 |
Target: 5'- gUC-CGgaUGCUCGuCGAGGAGuUCGUCg -3' miRNA: 3'- -AGuGCg-ACGAGCuGCUCCUCuAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 59747 | 0.73 | 0.707811 |
Target: 5'- --cUGCUGCUgGACGAGGAGA-CGg- -3' miRNA: 3'- aguGCGACGAgCUGCUCCUCUaGCag -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 119067 | 0.73 | 0.743479 |
Target: 5'- aUCGCGCUGCugucccucgaccggUCGcGCGAGGAGGUgCGg- -3' miRNA: 3'- -AGUGCGACG--------------AGC-UGCUCCUCUA-GCag -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 161711 | 0.72 | 0.765038 |
Target: 5'- -gACGCgGC-CGGCGAcGGGAUCGUCu -3' miRNA: 3'- agUGCGaCGaGCUGCUcCUCUAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 163435 | 0.72 | 0.765038 |
Target: 5'- cUCACGUaGC-CGGCgGAGGAGAgacgugUCGUCg -3' miRNA: 3'- -AGUGCGaCGaGCUG-CUCCUCU------AGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 228084 | 0.72 | 0.783303 |
Target: 5'- aCGgGCUGCacacggUCGggaGCGAGGAGggCGUCg -3' miRNA: 3'- aGUgCGACG------AGC---UGCUCCUCuaGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 83356 | 0.72 | 0.755731 |
Target: 5'- gCAUGCUcGgUCGGCGAuguGGAcGAUCGUCg -3' miRNA: 3'- aGUGCGA-CgAGCUGCU---CCU-CUAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 223094 | 0.71 | 0.80105 |
Target: 5'- cCGCgGCUGCgUCGACGGGGAGGggGaUCc -3' miRNA: 3'- aGUG-CGACG-AGCUGCUCCUCUagC-AG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 147805 | 0.7 | 0.879863 |
Target: 5'- aCGCGCgcccgugGCUCGAgagccuCGGGGGGAUCa-- -3' miRNA: 3'- aGUGCGa------CGAGCU------GCUCCUCUAGcag -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 85286 | 0.7 | 0.865606 |
Target: 5'- -gGCGCggacCUCGuGCGAGGGGAUCGa- -3' miRNA: 3'- agUGCGac--GAGC-UGCUCCUCUAGCag -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 45370 | 0.7 | 0.865606 |
Target: 5'- cCGCGaCUGCUgCGACGAGGAcgcgggccggGAcUGUCg -3' miRNA: 3'- aGUGC-GACGA-GCUGCUCCU----------CUaGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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