Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8957 | 3' | -54.9 | NC_002512.2 | + | 228084 | 0.72 | 0.783303 |
Target: 5'- aCGgGCUGCacacggUCGggaGCGAGGAGggCGUCg -3' miRNA: 3'- aGUgCGACG------AGC---UGCUCCUCuaGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 226573 | 0.69 | 0.911757 |
Target: 5'- aCGCGUgugGCggaUGGCGAGGAGGcaUCGUg -3' miRNA: 3'- aGUGCGa--CGa--GCUGCUCCUCU--AGCAg -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 223627 | 0.7 | 0.879863 |
Target: 5'- gUCGCugguGCUGCUCGGCGGGc---UCGUCa -3' miRNA: 3'- -AGUG----CGACGAGCUGCUCcucuAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 223094 | 0.71 | 0.80105 |
Target: 5'- cCGCgGCUGCgUCGACGGGGAGGggGaUCc -3' miRNA: 3'- aGUG-CGACG-AGCUGCUCCUCUagC-AG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 221800 | 0.67 | 0.962139 |
Target: 5'- cUACGCcgGCgaCGAguuCGAGGAGcUCGUCu -3' miRNA: 3'- aGUGCGa-CGa-GCU---GCUCCUCuAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 220676 | 0.68 | 0.93803 |
Target: 5'- cCGCGUcgUGCUgGGCGAcgggacGGAGGUCaGUCc -3' miRNA: 3'- aGUGCG--ACGAgCUGCU------CCUCUAG-CAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 219814 | 0.7 | 0.865606 |
Target: 5'- aCGCGCgggGCgCGAC-AGGGGGUCGgUCg -3' miRNA: 3'- aGUGCGa--CGaGCUGcUCCUCUAGC-AG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 219681 | 0.7 | 0.865606 |
Target: 5'- gCGCGCcGCccgagGACGAGGAGGagCGUCg -3' miRNA: 3'- aGUGCGaCGag---CUGCUCCUCUa-GCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 219258 | 0.66 | 0.971333 |
Target: 5'- cUCugGCUGCUCGucCGgcAGGGGG-CGg- -3' miRNA: 3'- -AGugCGACGAGCu-GC--UCCUCUaGCag -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 219205 | 0.7 | 0.861171 |
Target: 5'- aCcCGCUGCacugccgggccggccUCGGCGAGGucgGGAUCGUg -3' miRNA: 3'- aGuGCGACG---------------AGCUGCUCC---UCUAGCAg -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 219017 | 0.66 | 0.968468 |
Target: 5'- gCACuGCUGCUgCGACGugcuGGucuacGUCGUCg -3' miRNA: 3'- aGUG-CGACGA-GCUGCu---CCuc---UAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 215174 | 0.67 | 0.96008 |
Target: 5'- gUCcUGCUGCUCGGgGAGcGGAcgcgggucuaccucuUCGUCg -3' miRNA: 3'- -AGuGCGACGAGCUgCUCcUCU---------------AGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 212199 | 1.11 | 0.004539 |
Target: 5'- gUCACGCUGCUCGACGAGGAGAUCGUCg -3' miRNA: 3'- -AGUGCGACGAGCUGCUCCUCUAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 211843 | 0.69 | 0.90582 |
Target: 5'- cCGgGCU-CUCGGcCGAGGAGAaggaccucagcaUCGUCg -3' miRNA: 3'- aGUgCGAcGAGCU-GCUCCUCU------------AGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 211060 | 0.68 | 0.933232 |
Target: 5'- cUC-CGCUcGCUCGuCcAGGAGcUCGUCg -3' miRNA: 3'- -AGuGCGA-CGAGCuGcUCCUCuAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 209945 | 0.69 | 0.90582 |
Target: 5'- uUCGUGCUGCUCGACcGGGcgcGGGUCcUCa -3' miRNA: 3'- -AGUGCGACGAGCUGcUCC---UCUAGcAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 195798 | 0.67 | 0.951073 |
Target: 5'- gCGUGUUGCUCcgcuGCGGGGAcAUCGUCg -3' miRNA: 3'- aGUGCGACGAGc---UGCUCCUcUAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 195387 | 0.69 | 0.90582 |
Target: 5'- gUCAC-CUGCcgggUCGACcGGGAGcUCGUCu -3' miRNA: 3'- -AGUGcGACG----AGCUGcUCCUCuAGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 193348 | 0.69 | 0.917467 |
Target: 5'- aCGgGCUcGCcacCGugGAGGAGGaguUCGUCg -3' miRNA: 3'- aGUgCGA-CGa--GCugCUCCUCU---AGCAG- -5' |
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8957 | 3' | -54.9 | NC_002512.2 | + | 186813 | 0.67 | 0.951073 |
Target: 5'- cCGCGCcccgggaccggUGcCUCGGCGAGGcccuGcgCGUCg -3' miRNA: 3'- aGUGCG-----------AC-GAGCUGCUCCu---CuaGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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