miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 3' -54.9 NC_002512.2 + 211843 0.69 0.90582
Target:  5'- cCGgGCU-CUCGGcCGAGGAGAaggaccucagcaUCGUCg -3'
miRNA:   3'- aGUgCGAcGAGCU-GCUCCUCU------------AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 151053 0.68 0.92295
Target:  5'- gUCACGCggucCUCGACGgcGGGGGAUgCGgUCu -3'
miRNA:   3'- -AGUGCGac--GAGCUGC--UCCUCUA-GC-AG- -5'
8957 3' -54.9 NC_002512.2 + 221800 0.67 0.962139
Target:  5'- cUACGCcgGCgaCGAguuCGAGGAGcUCGUCu -3'
miRNA:   3'- aGUGCGa-CGa-GCU---GCUCCUCuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 175900 0.66 0.974006
Target:  5'- cUCACcaGCgGCUgCGACGAGaucAGGUUGUCg -3'
miRNA:   3'- -AGUG--CGaCGA-GCUGCUCc--UCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 219205 0.7 0.861171
Target:  5'- aCcCGCUGCacugccgggccggccUCGGCGAGGucgGGAUCGUg -3'
miRNA:   3'- aGuGCGACG---------------AGCUGCUCC---UCUAGCAg -5'
8957 3' -54.9 NC_002512.2 + 39698 0.69 0.886678
Target:  5'- cCGCGCUagaacccgggacGUUCGACGAGGAuuUCGg- -3'
miRNA:   3'- aGUGCGA------------CGAGCUGCUCCUcuAGCag -5'
8957 3' -54.9 NC_002512.2 + 72886 0.68 0.93803
Target:  5'- cUCACGCUGCUCcgcagcaucCGGGGAGAggaUUGg- -3'
miRNA:   3'- -AGUGCGACGAGcu-------GCUCCUCU---AGCag -5'
8957 3' -54.9 NC_002512.2 + 180367 0.66 0.974006
Target:  5'- gUCGCGCagggcgccgaUGCUCuGCGGGGGGA-CGa- -3'
miRNA:   3'- -AGUGCG----------ACGAGcUGCUCCUCUaGCag -5'
8957 3' -54.9 NC_002512.2 + 124949 0.69 0.893278
Target:  5'- cCGCGCcgacGC-CgGACGAGGAGGcCGUCg -3'
miRNA:   3'- aGUGCGa---CGaG-CUGCUCCUCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 156167 0.66 0.977438
Target:  5'- cUguCGCUGCUCGagcGCGAccagcucauggucauGGAcGUCGUCa -3'
miRNA:   3'- -AguGCGACGAGC---UGCU---------------CCUcUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 211060 0.68 0.933232
Target:  5'- cUC-CGCUcGCUCGuCcAGGAGcUCGUCg -3'
miRNA:   3'- -AGuGCGA-CGAGCuGcUCCUCuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 195387 0.69 0.90582
Target:  5'- gUCAC-CUGCcgggUCGACcGGGAGcUCGUCu -3'
miRNA:   3'- -AGUGcGACG----AGCUGcUCCUCuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 195798 0.67 0.951073
Target:  5'- gCGUGUUGCUCcgcuGCGGGGAcAUCGUCg -3'
miRNA:   3'- aGUGCGACGAGc---UGCUCCUcUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 215174 0.67 0.96008
Target:  5'- gUCcUGCUGCUCGGgGAGcGGAcgcgggucuaccucuUCGUCg -3'
miRNA:   3'- -AGuGCGACGAGCUgCUCcUCU---------------AGCAG- -5'
8957 3' -54.9 NC_002512.2 + 108811 0.66 0.970494
Target:  5'- -gGCGCUGUUCcGCGAGGcgugcgagguguacGGAgCGUCc -3'
miRNA:   3'- agUGCGACGAGcUGCUCC--------------UCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 155874 0.66 0.973487
Target:  5'- cCACGCUGUUCGuccccgacggcgggcGCGGGGAcGAguccggcgccgacgCGUCc -3'
miRNA:   3'- aGUGCGACGAGC---------------UGCUCCU-CUa-------------GCAG- -5'
8957 3' -54.9 NC_002512.2 + 161711 0.72 0.765038
Target:  5'- -gACGCgGC-CGGCGAcGGGAUCGUCu -3'
miRNA:   3'- agUGCGaCGaGCUGCUcCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 223094 0.71 0.80105
Target:  5'- cCGCgGCUGCgUCGACGGGGAGGggGaUCc -3'
miRNA:   3'- aGUG-CGACG-AGCUGCUCCUCUagC-AG- -5'
8957 3' -54.9 NC_002512.2 + 219681 0.7 0.865606
Target:  5'- gCGCGCcGCccgagGACGAGGAGGagCGUCg -3'
miRNA:   3'- aGUGCGaCGag---CUGCUCCUCUa-GCAG- -5'
8957 3' -54.9 NC_002512.2 + 151569 0.69 0.886678
Target:  5'- uUCcCGagaGC-CGGCGAGGAGAUCGgUCa -3'
miRNA:   3'- -AGuGCga-CGaGCUGCUCCUCUAGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.