miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 3' -54.9 NC_002512.2 + 27974 0.66 0.978802
Target:  5'- aUC-CGCgGUUCGGauuacaucuuCGAGGAGGUCG-Cg -3'
miRNA:   3'- -AGuGCGaCGAGCU----------GCUCCUCUAGCaG- -5'
8957 3' -54.9 NC_002512.2 + 220676 0.68 0.93803
Target:  5'- cCGCGUcgUGCUgGGCGAcgggacGGAGGUCaGUCc -3'
miRNA:   3'- aGUGCG--ACGAgCUGCU------CCUCUAG-CAG- -5'
8957 3' -54.9 NC_002512.2 + 211060 0.68 0.933232
Target:  5'- cUC-CGCUcGCUCGuCcAGGAGcUCGUCg -3'
miRNA:   3'- -AGuGCGA-CGAGCuGcUCCUCuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 212199 1.11 0.004539
Target:  5'- gUCACGCUGCUCGACGAGGAGAUCGUCg -3'
miRNA:   3'- -AGUGCGACGAGCUGCUCCUCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 175900 0.66 0.974006
Target:  5'- cUCACcaGCgGCUgCGACGAGaucAGGUUGUCg -3'
miRNA:   3'- -AGUG--CGaCGA-GCUGCUCc--UCUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 155874 0.66 0.973487
Target:  5'- cCACGCUGUUCGuccccgacggcgggcGCGGGGAcGAguccggcgccgacgCGUCc -3'
miRNA:   3'- aGUGCGACGAGC---------------UGCUCCU-CUa-------------GCAG- -5'
8957 3' -54.9 NC_002512.2 + 219258 0.66 0.971333
Target:  5'- cUCugGCUGCUCGucCGgcAGGGGG-CGg- -3'
miRNA:   3'- -AGugCGACGAGCu-GC--UCCUCUaGCag -5'
8957 3' -54.9 NC_002512.2 + 108811 0.66 0.970494
Target:  5'- -gGCGCUGUUCcGCGAGGcgugcgagguguacGGAgCGUCc -3'
miRNA:   3'- agUGCGACGAGcUGCUCC--------------UCUaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 221800 0.67 0.962139
Target:  5'- cUACGCcgGCgaCGAguuCGAGGAGcUCGUCu -3'
miRNA:   3'- aGUGCGa-CGa-GCU---GCUCCUCuAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 172114 0.67 0.948626
Target:  5'- ---aGCUGCuccuguccggcaccgUCGACGAGGAGcgCGa- -3'
miRNA:   3'- agugCGACG---------------AGCUGCUCCUCuaGCag -5'
8957 3' -54.9 NC_002512.2 + 186813 0.67 0.951073
Target:  5'- cCGCGCcccgggaccggUGcCUCGGCGAGGcccuGcgCGUCg -3'
miRNA:   3'- aGUGCG-----------AC-GAGCUGCUCCu---CuaGCAG- -5'
8957 3' -54.9 NC_002512.2 + 90312 0.67 0.965405
Target:  5'- gCGCGgaGCUgagCGccuGCGAGGAGAUCa-- -3'
miRNA:   3'- aGUGCgaCGA---GC---UGCUCCUCUAGcag -5'
8957 3' -54.9 NC_002512.2 + 149791 0.66 0.978802
Target:  5'- cCACGa-GCUgGACGGGaucGAGAUgGUCg -3'
miRNA:   3'- aGUGCgaCGAgCUGCUC---CUCUAgCAG- -5'
8957 3' -54.9 NC_002512.2 + 186469 0.67 0.951073
Target:  5'- cCGUGCUGCUCGGCcGGcGGAUCGcCg -3'
miRNA:   3'- aGUGCGACGAGCUGcUCcUCUAGCaG- -5'
8957 3' -54.9 NC_002512.2 + 156167 0.66 0.977438
Target:  5'- cUguCGCUGCUCGagcGCGAccagcucauggucauGGAcGUCGUCa -3'
miRNA:   3'- -AguGCGACGAGC---UGCU---------------CCUcUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 219017 0.66 0.968468
Target:  5'- gCACuGCUGCUgCGACGugcuGGucuacGUCGUCg -3'
miRNA:   3'- aGUG-CGACGA-GCUGCu---CCuc---UAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 195798 0.67 0.951073
Target:  5'- gCGUGUUGCUCcgcuGCGGGGAcAUCGUCg -3'
miRNA:   3'- aGUGCGACGAGc---UGCUCCUcUAGCAG- -5'
8957 3' -54.9 NC_002512.2 + 72886 0.68 0.93803
Target:  5'- cUCACGCUGCUCcgcagcaucCGGGGAGAggaUUGg- -3'
miRNA:   3'- -AGUGCGACGAGcu-------GCUCCUCU---AGCag -5'
8957 3' -54.9 NC_002512.2 + 180367 0.66 0.974006
Target:  5'- gUCGCGCagggcgccgaUGCUCuGCGGGGGGA-CGa- -3'
miRNA:   3'- -AGUGCG----------ACGAGcUGCUCCUCUaGCag -5'
8957 3' -54.9 NC_002512.2 + 134271 0.66 0.971333
Target:  5'- aUC-UGCUGCUCGugGugaGGGAGAaggCGg- -3'
miRNA:   3'- -AGuGCGACGAGCugC---UCCUCUa--GCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.