miRNA display CGI


Results 1 - 20 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 5' -56.4 NC_002512.2 + 8850 0.66 0.962833
Target:  5'- cGGAacaGugGUGUgcacCGUCGGUCACGa- -3'
miRNA:   3'- cCCUg--CugUACAa---GCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 228100 0.67 0.930003
Target:  5'- cGGGAgCGAgGaGggCGUCGGCCGCa-- -3'
miRNA:   3'- -CCCU-GCUgUaCaaGCGGCCGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 138956 0.67 0.924925
Target:  5'- -cGGCGGCGgccgCGCCGGCCcCGUu -3'
miRNA:   3'- ccCUGCUGUacaaGCGGCCGGuGCAc -5'
8957 5' -56.4 NC_002512.2 + 212235 1.11 0.003638
Target:  5'- gGGGACGACAUGUUCGCCGGCCACGUGg -3'
miRNA:   3'- -CCCUGCUGUACAAGCGGCCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 110394 0.66 0.955895
Target:  5'- uGGcCGuguACAUGUgcUCGCCGGaCCGCGc- -3'
miRNA:   3'- cCCuGC---UGUACA--AGCGGCC-GGUGCac -5'
8957 5' -56.4 NC_002512.2 + 158718 0.66 0.955156
Target:  5'- uGGACGACGUGUccuucuUCGUCGacgaccaggaaCACGUGg -3'
miRNA:   3'- cCCUGCUGUACA------AGCGGCcg---------GUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 149232 0.66 0.952116
Target:  5'- cGGGAcCGACGgacccggCGCCGccGCCGCGg- -3'
miRNA:   3'- -CCCU-GCUGUacaa---GCGGC--CGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 141265 0.66 0.948126
Target:  5'- -cGACGACcacGUUcgucccgaCGCCGGCCGCGc- -3'
miRNA:   3'- ccCUGCUGua-CAA--------GCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 145047 0.67 0.943922
Target:  5'- cGGGACGGCcgGga-GaUCGaCCACGUGg -3'
miRNA:   3'- -CCCUGCUGuaCaagC-GGCcGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 151352 0.67 0.934862
Target:  5'- -cGGCGcCAUGUUgccucaagauggCGCCGGCCgaaaACGUGc -3'
miRNA:   3'- ccCUGCuGUACAA------------GCGGCCGG----UGCAC- -5'
8957 5' -56.4 NC_002512.2 + 166451 0.67 0.939501
Target:  5'- gGGGGCGACGg---CGCCGGgCuCGa- -3'
miRNA:   3'- -CCCUGCUGUacaaGCGGCCgGuGCac -5'
8957 5' -56.4 NC_002512.2 + 205583 0.67 0.943922
Target:  5'- gGGGACG-CA-GUUCGCCccGCCGCu-- -3'
miRNA:   3'- -CCCUGCuGUaCAAGCGGc-CGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 161271 0.66 0.962505
Target:  5'- cGGGCuuugccuGACGUGggcgagUCGCUGGCCuACGa- -3'
miRNA:   3'- cCCUG-------CUGUACa-----AGCGGCCGG-UGCac -5'
8957 5' -56.4 NC_002512.2 + 87846 0.67 0.939047
Target:  5'- cGGGcccucGCGGCGgg-UCGCCGGCCcccggccGCGg- -3'
miRNA:   3'- -CCC-----UGCUGUacaAGCGGCCGG-------UGCac -5'
8957 5' -56.4 NC_002512.2 + 206299 0.66 0.959466
Target:  5'- uGGAUcuCGUGUUCGCucucgcccagCGGCCACGc- -3'
miRNA:   3'- cCCUGcuGUACAAGCG----------GCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 190355 0.66 0.948126
Target:  5'- -cGACGACggGggCGUCGGCC-CGg- -3'
miRNA:   3'- ccCUGCUGuaCaaGCGGCCGGuGCac -5'
8957 5' -56.4 NC_002512.2 + 124617 0.67 0.934862
Target:  5'- cGGAcgcCGAgAUG-UCGCUGGCCcUGUGg -3'
miRNA:   3'- cCCU---GCUgUACaAGCGGCCGGuGCAC- -5'
8957 5' -56.4 NC_002512.2 + 130889 0.67 0.930003
Target:  5'- cGGGGCcGCGcagagGCCGGCCAuCGUGg -3'
miRNA:   3'- -CCCUGcUGUacaagCGGCCGGU-GCAC- -5'
8957 5' -56.4 NC_002512.2 + 213079 0.66 0.955895
Target:  5'- cGGGCuACGUGcucUUCGUCGGCgGCGa- -3'
miRNA:   3'- cCCUGcUGUAC---AAGCGGCCGgUGCac -5'
8957 5' -56.4 NC_002512.2 + 206136 0.66 0.952116
Target:  5'- cGGGGCGuCcgG-UCGCCagacggucauGGCCGUGUGg -3'
miRNA:   3'- -CCCUGCuGuaCaAGCGG----------CCGGUGCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.