miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 3' -64.8 NC_002512.2 + 95752 0.66 0.589064
Target:  5'- gGGaCGCG-CGCCGCgacggccgCCUGgaCGGGGg- -3'
miRNA:   3'- -UC-GCGCaGCGGCG--------GGACgaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 176406 0.66 0.626639
Target:  5'- cGcCGCGUCGUgGCaCCUGUccagCaGGGUGg -3'
miRNA:   3'- uC-GCGCAGCGgCG-GGACGa---GcCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 217493 0.74 0.214172
Target:  5'- cGGCGCcgccGcCGCCGCCCgaaggcgaGCUCGGGGg- -3'
miRNA:   3'- -UCGCG----CaGCGGCGGGa-------CGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 181599 0.69 0.421194
Target:  5'- cGGCGgGUcCGCgaCGUccuCCUGCUCGGGGg- -3'
miRNA:   3'- -UCGCgCA-GCG--GCG---GGACGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 193845 0.67 0.534503
Target:  5'- cGGgGCGUCcCCGCUCUGCccaguacaucggacgCGGcGGUGg -3'
miRNA:   3'- -UCgCGCAGcGGCGGGACGa--------------GCC-CCAC- -5'
8958 3' -64.8 NC_002512.2 + 128775 0.66 0.636056
Target:  5'- gAGCGCacgccgCGCCGCgCgcugGC-CGGGGUc -3'
miRNA:   3'- -UCGCGca----GCGGCGgGa---CGaGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 205618 0.69 0.428523
Target:  5'- uGC-CGUCGCCGCcguccuuCCUGCccgCGGGGg- -3'
miRNA:   3'- uCGcGCAGCGGCG-------GGACGa--GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 168036 0.66 0.636056
Target:  5'- gAGUGCGgCGCCuaUCUcGCUCGGGaGUc -3'
miRNA:   3'- -UCGCGCaGCGGcgGGA-CGAGCCC-CAc -5'
8958 3' -64.8 NC_002512.2 + 95678 0.66 0.645471
Target:  5'- gAGCGCG-CGuCCGCCggGCcuccggCGGGGa- -3'
miRNA:   3'- -UCGCGCaGC-GGCGGgaCGa-----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 119932 0.67 0.533592
Target:  5'- gAGCGCGgCGUCGCCCccGCaCGcGGUGg -3'
miRNA:   3'- -UCGCGCaGCGGCGGGa-CGaGCcCCAC- -5'
8958 3' -64.8 NC_002512.2 + 100793 0.75 0.200045
Target:  5'- cGcCGCGaCGCCGCCCgucCUCGGGGUc -3'
miRNA:   3'- uC-GCGCaGCGGCGGGac-GAGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 223221 0.67 0.579723
Target:  5'- gAGCGCGUC-CCGgCCgGCUCGGu--- -3'
miRNA:   3'- -UCGCGCAGcGGCgGGaCGAGCCccac -5'
8958 3' -64.8 NC_002512.2 + 183971 0.68 0.48009
Target:  5'- cGgGCGUCGUCGCCUg--UCGGGGc- -3'
miRNA:   3'- uCgCGCAGCGGCGGGacgAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 222255 0.7 0.413139
Target:  5'- uGGCGgGUCucgugaugGCCugcGCCCUGCUCGGGc-- -3'
miRNA:   3'- -UCGCgCAG--------CGG---CGGGACGAGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 181384 0.7 0.388785
Target:  5'- cGCGCGUCGUcgugCGCCCUggccuccGC-CGGGGa- -3'
miRNA:   3'- uCGCGCAGCG----GCGGGA-------CGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 146834 0.66 0.607821
Target:  5'- cGCGCGagGUCGCCUgGCcCaGGGUGc -3'
miRNA:   3'- uCGCGCagCGGCGGGaCGaGcCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 220162 0.66 0.617225
Target:  5'- aAGgGCGUCG-UGCUCUGCgUCGGGa-- -3'
miRNA:   3'- -UCgCGCAGCgGCGGGACG-AGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 21512 0.68 0.468838
Target:  5'- cAGCGUcgggccaccucgucGUCGaaaCGCaCCUGCUCcucgGGGGUGa -3'
miRNA:   3'- -UCGCG--------------CAGCg--GCG-GGACGAG----CCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 102797 0.67 0.570413
Target:  5'- cGC-CGcCGCCGCCCUccGCUCcGGGa- -3'
miRNA:   3'- uCGcGCaGCGGCGGGA--CGAGcCCCac -5'
8958 3' -64.8 NC_002512.2 + 104472 0.67 0.570413
Target:  5'- uGGUGuCGUCGuUCGCCCUcggGCcCGGGGa- -3'
miRNA:   3'- -UCGC-GCAGC-GGCGGGA---CGaGCCCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.