miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 3' -64.8 NC_002512.2 + 95678 0.66 0.645471
Target:  5'- gAGCGCG-CGuCCGCCggGCcuccggCGGGGa- -3'
miRNA:   3'- -UCGCGCaGC-GGCGGgaCGa-----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 193845 0.67 0.534503
Target:  5'- cGGgGCGUCcCCGCUCUGCccaguacaucggacgCGGcGGUGg -3'
miRNA:   3'- -UCgCGCAGcGGCGGGACGa--------------GCC-CCAC- -5'
8958 3' -64.8 NC_002512.2 + 108418 0.67 0.533592
Target:  5'- uGCuCGUcugCGCCGCCCgggGC-CGGGGg- -3'
miRNA:   3'- uCGcGCA---GCGGCGGGa--CGaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 211177 1.06 0.001173
Target:  5'- gAGCGCGUCGCCGCCCUGCUCGGGGUGc -3'
miRNA:   3'- -UCGCGCAGCGGCGGGACGAGCCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 220162 0.66 0.617225
Target:  5'- aAGgGCGUCG-UGCUCUGCgUCGGGa-- -3'
miRNA:   3'- -UCgCGCAGCgGCGGGACG-AGCCCcac -5'
8958 3' -64.8 NC_002512.2 + 159896 0.66 0.617225
Target:  5'- aGGUGUGUCGaCGgcucuuguCCCUGCUgGGGGc- -3'
miRNA:   3'- -UCGCGCAGCgGC--------GGGACGAgCCCCac -5'
8958 3' -64.8 NC_002512.2 + 146834 0.66 0.607821
Target:  5'- cGCGCGagGUCGCCUgGCcCaGGGUGc -3'
miRNA:   3'- uCGCGCagCGGCGGGaCGaGcCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 224695 0.66 0.607821
Target:  5'- cGCG-GUCcugcCCGCCCUGCU-GGGGc- -3'
miRNA:   3'- uCGCgCAGc---GGCGGGACGAgCCCCac -5'
8958 3' -64.8 NC_002512.2 + 223221 0.67 0.579723
Target:  5'- gAGCGCGUC-CCGgCCgGCUCGGu--- -3'
miRNA:   3'- -UCGCGCAGcGGCgGGaCGAGCCccac -5'
8958 3' -64.8 NC_002512.2 + 215155 0.67 0.542725
Target:  5'- aGGCGaCGagcaccUgGCCGUCCugcUGCUCGGGGa- -3'
miRNA:   3'- -UCGC-GC------AgCGGCGGG---ACGAGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 96651 0.67 0.561141
Target:  5'- cGGgGCGcCGCCGCCCUcccguccucGCUgGGcGGa- -3'
miRNA:   3'- -UCgCGCaGCGGCGGGA---------CGAgCC-CCac -5'
8958 3' -64.8 NC_002512.2 + 95752 0.66 0.589064
Target:  5'- gGGaCGCG-CGCCGCgacggccgCCUGgaCGGGGg- -3'
miRNA:   3'- -UC-GCGCaGCGGCG--------GGACgaGCCCCac -5'
8958 3' -64.8 NC_002512.2 + 168036 0.66 0.636056
Target:  5'- gAGUGCGgCGCCuaUCUcGCUCGGGaGUc -3'
miRNA:   3'- -UCGCGCaGCGGcgGGA-CGAGCCC-CAc -5'
8958 3' -64.8 NC_002512.2 + 169081 0.67 0.54823
Target:  5'- cGGCgGCGUCGCgGCCC-GCguccucguccucgCGGGGc- -3'
miRNA:   3'- -UCG-CGCAGCGgCGGGaCGa------------GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 128775 0.66 0.636056
Target:  5'- gAGCGCacgccgCGCCGCgCgcugGC-CGGGGUc -3'
miRNA:   3'- -UCGCGca----GCGGCGgGa---CGaGCCCCAc -5'
8958 3' -64.8 NC_002512.2 + 111168 0.66 0.598432
Target:  5'- cAGCaCGUCGCCGgCgaGCggcaggCGGGGg- -3'
miRNA:   3'- -UCGcGCAGCGGCgGgaCGa-----GCCCCac -5'
8958 3' -64.8 NC_002512.2 + 220370 0.67 0.542725
Target:  5'- uGGC-CGcCGCCGCCgUGCU-GGGGc- -3'
miRNA:   3'- -UCGcGCaGCGGCGGgACGAgCCCCac -5'
8958 3' -64.8 NC_002512.2 + 119932 0.67 0.533592
Target:  5'- gAGCGCGgCGUCGCCCccGCaCGcGGUGg -3'
miRNA:   3'- -UCGCGCaGCGGCGGGa-CGaGCcCCAC- -5'
8958 3' -64.8 NC_002512.2 + 176406 0.66 0.626639
Target:  5'- cGcCGCGUCGUgGCaCCUGUccagCaGGGUGg -3'
miRNA:   3'- uC-GCGCAGCGgCG-GGACGa---GcCCCAC- -5'
8958 3' -64.8 NC_002512.2 + 15302 0.66 0.611581
Target:  5'- uAGCGUucuccucauaaucggGaUCGUCGCCCUGgUCGcGGUGa -3'
miRNA:   3'- -UCGCG---------------C-AGCGGCGGGACgAGCcCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.