Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8958 | 5' | -52.3 | NC_002512.2 | + | 156991 | 0.66 | 0.996926 |
Target: 5'- aUCCUCUCCc-CGGaUGCUGCGGa-GCa -3' miRNA: 3'- -AGGAGAGGcuGCUcAUGAUGCUgaCG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 193407 | 0.66 | 0.996405 |
Target: 5'- uUCUUCaUCGACGAGgacgACgACGACUacgaGCg -3' miRNA: 3'- -AGGAGaGGCUGCUCa---UGaUGCUGA----CG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 204012 | 0.66 | 0.996405 |
Target: 5'- gCCUCUUCGGCuucGUGCgggcCGACgGCg -3' miRNA: 3'- aGGAGAGGCUGcu-CAUGau--GCUGaCG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 165815 | 0.66 | 0.996405 |
Target: 5'- aCCUUcCCGucCGAGUACgagAUG-CUGCu -3' miRNA: 3'- aGGAGaGGCu-GCUCAUGa--UGCuGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 99041 | 0.66 | 0.996405 |
Target: 5'- gCCUCgcCCGACcgccGGUACU-CGACcGCg -3' miRNA: 3'- aGGAGa-GGCUGc---UCAUGAuGCUGaCG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 86317 | 0.66 | 0.996405 |
Target: 5'- cCCUCUCCGccggcccgcccGCGGGgagACgcGCGGCcGCc -3' miRNA: 3'- aGGAGAGGC-----------UGCUCa--UGa-UGCUGaCG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 196936 | 0.66 | 0.995813 |
Target: 5'- gUCUC-CCGGCGuGUugUGCcgaauuGCUGCu -3' miRNA: 3'- aGGAGaGGCUGCuCAugAUGc-----UGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 149405 | 0.66 | 0.995813 |
Target: 5'- cUCCUCgacgggCCG-CGAGgggACcGCGGCggggGCg -3' miRNA: 3'- -AGGAGa-----GGCuGCUCa--UGaUGCUGa---CG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 173060 | 0.66 | 0.995813 |
Target: 5'- aUCCUCUgCGACa---ACUGCGgacACUGCc -3' miRNA: 3'- -AGGAGAgGCUGcucaUGAUGC---UGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 114240 | 0.66 | 0.995813 |
Target: 5'- gUCCUCaUCGACGGcgAC--CGGCUGCg -3' miRNA: 3'- -AGGAGaGGCUGCUcaUGauGCUGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 9720 | 0.66 | 0.995144 |
Target: 5'- cUCCUC-CCGACGcAGaGC-ACGAC-GCc -3' miRNA: 3'- -AGGAGaGGCUGC-UCaUGaUGCUGaCG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 104938 | 0.66 | 0.995144 |
Target: 5'- cUCCUCgUCCGGCGucgGC-GCGGCgccgGCc -3' miRNA: 3'- -AGGAG-AGGCUGCucaUGaUGCUGa---CG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 129373 | 0.66 | 0.995144 |
Target: 5'- cUUCUgUCuCGuGCGGGUGCUcgACGACcGCg -3' miRNA: 3'- -AGGAgAG-GC-UGCUCAUGA--UGCUGaCG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 200944 | 0.66 | 0.99439 |
Target: 5'- aUCUUCUgcgCCGuCGAGUGgUACGGCa-- -3' miRNA: 3'- -AGGAGA---GGCuGCUCAUgAUGCUGacg -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 125867 | 0.66 | 0.99439 |
Target: 5'- cCCUCuggUCCGGCGGGc---ACGGCUGg -3' miRNA: 3'- aGGAG---AGGCUGCUCaugaUGCUGACg -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 48162 | 0.67 | 0.993894 |
Target: 5'- aUCUUCgCCacgcguuacgacgagGACGAGUucCUGCGACUGa -3' miRNA: 3'- -AGGAGaGG---------------CUGCUCAu-GAUGCUGACg -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 196752 | 0.67 | 0.993544 |
Target: 5'- -gCUCgaCCGGCGGcGUguacuGCUACGAcCUGCa -3' miRNA: 3'- agGAGa-GGCUGCU-CA-----UGAUGCU-GACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 226021 | 0.67 | 0.993454 |
Target: 5'- ---aCUCCGAgGAcgacguccgcuccGU-CUACGACUGCg -3' miRNA: 3'- aggaGAGGCUgCU-------------CAuGAUGCUGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 182337 | 0.67 | 0.992599 |
Target: 5'- gCCUC-CCG-CGuGUACUccgcgccCGGCUGCu -3' miRNA: 3'- aGGAGaGGCuGCuCAUGAu------GCUGACG- -5' |
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8958 | 5' | -52.3 | NC_002512.2 | + | 115983 | 0.67 | 0.991548 |
Target: 5'- gCCUCgUCGACGucuuCUGCGcCUGCa -3' miRNA: 3'- aGGAGaGGCUGCucauGAUGCuGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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