miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8958 5' -52.3 NC_002512.2 + 156991 0.66 0.996926
Target:  5'- aUCCUCUCCc-CGGaUGCUGCGGa-GCa -3'
miRNA:   3'- -AGGAGAGGcuGCUcAUGAUGCUgaCG- -5'
8958 5' -52.3 NC_002512.2 + 86317 0.66 0.996405
Target:  5'- cCCUCUCCGccggcccgcccGCGGGgagACgcGCGGCcGCc -3'
miRNA:   3'- aGGAGAGGC-----------UGCUCa--UGa-UGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 193407 0.66 0.996405
Target:  5'- uUCUUCaUCGACGAGgacgACgACGACUacgaGCg -3'
miRNA:   3'- -AGGAGaGGCUGCUCa---UGaUGCUGA----CG- -5'
8958 5' -52.3 NC_002512.2 + 204012 0.66 0.996405
Target:  5'- gCCUCUUCGGCuucGUGCgggcCGACgGCg -3'
miRNA:   3'- aGGAGAGGCUGcu-CAUGau--GCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 165815 0.66 0.996405
Target:  5'- aCCUUcCCGucCGAGUACgagAUG-CUGCu -3'
miRNA:   3'- aGGAGaGGCu-GCUCAUGa--UGCuGACG- -5'
8958 5' -52.3 NC_002512.2 + 99041 0.66 0.996405
Target:  5'- gCCUCgcCCGACcgccGGUACU-CGACcGCg -3'
miRNA:   3'- aGGAGa-GGCUGc---UCAUGAuGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 196936 0.66 0.995813
Target:  5'- gUCUC-CCGGCGuGUugUGCcgaauuGCUGCu -3'
miRNA:   3'- aGGAGaGGCUGCuCAugAUGc-----UGACG- -5'
8958 5' -52.3 NC_002512.2 + 149405 0.66 0.995813
Target:  5'- cUCCUCgacgggCCG-CGAGgggACcGCGGCggggGCg -3'
miRNA:   3'- -AGGAGa-----GGCuGCUCa--UGaUGCUGa---CG- -5'
8958 5' -52.3 NC_002512.2 + 173060 0.66 0.995813
Target:  5'- aUCCUCUgCGACa---ACUGCGgacACUGCc -3'
miRNA:   3'- -AGGAGAgGCUGcucaUGAUGC---UGACG- -5'
8958 5' -52.3 NC_002512.2 + 114240 0.66 0.995813
Target:  5'- gUCCUCaUCGACGGcgAC--CGGCUGCg -3'
miRNA:   3'- -AGGAGaGGCUGCUcaUGauGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 129373 0.66 0.995144
Target:  5'- cUUCUgUCuCGuGCGGGUGCUcgACGACcGCg -3'
miRNA:   3'- -AGGAgAG-GC-UGCUCAUGA--UGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 104938 0.66 0.995144
Target:  5'- cUCCUCgUCCGGCGucgGC-GCGGCgccgGCc -3'
miRNA:   3'- -AGGAG-AGGCUGCucaUGaUGCUGa---CG- -5'
8958 5' -52.3 NC_002512.2 + 9720 0.66 0.995144
Target:  5'- cUCCUC-CCGACGcAGaGC-ACGAC-GCc -3'
miRNA:   3'- -AGGAGaGGCUGC-UCaUGaUGCUGaCG- -5'
8958 5' -52.3 NC_002512.2 + 200944 0.66 0.99439
Target:  5'- aUCUUCUgcgCCGuCGAGUGgUACGGCa-- -3'
miRNA:   3'- -AGGAGA---GGCuGCUCAUgAUGCUGacg -5'
8958 5' -52.3 NC_002512.2 + 125867 0.66 0.99439
Target:  5'- cCCUCuggUCCGGCGGGc---ACGGCUGg -3'
miRNA:   3'- aGGAG---AGGCUGCUCaugaUGCUGACg -5'
8958 5' -52.3 NC_002512.2 + 48162 0.67 0.993894
Target:  5'- aUCUUCgCCacgcguuacgacgagGACGAGUucCUGCGACUGa -3'
miRNA:   3'- -AGGAGaGG---------------CUGCUCAu-GAUGCUGACg -5'
8958 5' -52.3 NC_002512.2 + 196752 0.67 0.993544
Target:  5'- -gCUCgaCCGGCGGcGUguacuGCUACGAcCUGCa -3'
miRNA:   3'- agGAGa-GGCUGCU-CA-----UGAUGCU-GACG- -5'
8958 5' -52.3 NC_002512.2 + 226021 0.67 0.993454
Target:  5'- ---aCUCCGAgGAcgacguccgcuccGU-CUACGACUGCg -3'
miRNA:   3'- aggaGAGGCUgCU-------------CAuGAUGCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 182337 0.67 0.992599
Target:  5'- gCCUC-CCG-CGuGUACUccgcgccCGGCUGCu -3'
miRNA:   3'- aGGAGaGGCuGCuCAUGAu------GCUGACG- -5'
8958 5' -52.3 NC_002512.2 + 115983 0.67 0.991548
Target:  5'- gCCUCgUCGACGucuuCUGCGcCUGCa -3'
miRNA:   3'- aGGAGaGGCUGCucauGAUGCuGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.