miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8960 3' -56.6 NC_002512.2 + 188113 0.66 0.934043
Target:  5'- -cGCCCgcgUCGACUucgauuucaACGUCgucgccGAGCUCAu -3'
miRNA:   3'- cuCGGGa--AGCUGG---------UGCAG------CUCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 218305 0.7 0.756481
Target:  5'- cGGCCCUgggCGGCCGC-UCGuGCUCc- -3'
miRNA:   3'- cUCGGGAa--GCUGGUGcAGCuCGAGuu -5'
8960 3' -56.6 NC_002512.2 + 216863 0.71 0.727891
Target:  5'- -cGCCCUcgUCGuCCGCGUCGucGUUCAGg -3'
miRNA:   3'- cuCGGGA--AGCuGGUGCAGCu-CGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 210735 1.06 0.005247
Target:  5'- cGAGCCCUUCGACCACGUCGAGCUCAAg -3'
miRNA:   3'- -CUCGGGAAGCUGGUGCAGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 131619 0.66 0.929036
Target:  5'- cGGCCCgccCGGCCACGaaGAcGCUCu- -3'
miRNA:   3'- cUCGGGaa-GCUGGUGCagCU-CGAGuu -5'
8960 3' -56.6 NC_002512.2 + 106623 0.66 0.925922
Target:  5'- -uGUCCUcCGACaugcggcgccgguCGUCGAGCUCGAa -3'
miRNA:   3'- cuCGGGAaGCUGgu-----------GCAGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 166443 0.66 0.912637
Target:  5'- -cGUCCUccgggggCGACgGCGcCGGGCUCGAg -3'
miRNA:   3'- cuCGGGAa------GCUGgUGCaGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 144562 0.66 0.912637
Target:  5'- aAGCUCcaaccggCGACCuACGUCGAGCggCAGg -3'
miRNA:   3'- cUCGGGaa-----GCUGG-UGCAGCUCGa-GUU- -5'
8960 3' -56.6 NC_002512.2 + 172463 0.68 0.873763
Target:  5'- -cGCCCUggUCGACaACGUCaccuuucagGGGCUCAAc -3'
miRNA:   3'- cuCGGGA--AGCUGgUGCAG---------CUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 193187 0.7 0.756481
Target:  5'- -cGCCuucuuCUUCGACCGCGUCuucGGCUCGc -3'
miRNA:   3'- cuCGG-----GAAGCUGGUGCAGc--UCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 158642 0.68 0.859099
Target:  5'- cGAcCCCUUCGACCccgACGUCGAGgC-CAc -3'
miRNA:   3'- -CUcGGGAAGCUGG---UGCAGCUC-GaGUu -5'
8960 3' -56.6 NC_002512.2 + 150945 0.67 0.887596
Target:  5'- aGGCuCCggCGGCCGCGgacucggaggCGGGCUCGc -3'
miRNA:   3'- cUCG-GGaaGCUGGUGCa---------GCUCGAGUu -5'
8960 3' -56.6 NC_002512.2 + 117126 0.66 0.934043
Target:  5'- gGGGCCCcgUCGGCgGCGuUCGAGUcgcugCAGc -3'
miRNA:   3'- -CUCGGGa-AGCUGgUGC-AGCUCGa----GUU- -5'
8960 3' -56.6 NC_002512.2 + 226700 0.68 0.843646
Target:  5'- -cGCCCg-CGGCgGCGUCGAGCg--- -3'
miRNA:   3'- cuCGGGaaGCUGgUGCAGCUCGaguu -5'
8960 3' -56.6 NC_002512.2 + 112947 0.66 0.934043
Target:  5'- cGAGCCCgcgGACCGgGUCGAagUCGAa -3'
miRNA:   3'- -CUCGGGaagCUGGUgCAGCUcgAGUU- -5'
8960 3' -56.6 NC_002512.2 + 132198 0.67 0.89419
Target:  5'- cAGCUgcUCGACCGCGUUGAGgaCGc -3'
miRNA:   3'- cUCGGgaAGCUGGUGCAGCUCgaGUu -5'
8960 3' -56.6 NC_002512.2 + 117382 0.69 0.819099
Target:  5'- -cGCCCUucUCGAUCuacuCGUCGGGCUg-- -3'
miRNA:   3'- cuCGGGA--AGCUGGu---GCAGCUCGAguu -5'
8960 3' -56.6 NC_002512.2 + 137323 0.7 0.756481
Target:  5'- aGAGCgaCCUacCGGCgCugGUCGGGCUCAGu -3'
miRNA:   3'- -CUCG--GGAa-GCUG-GugCAGCUCGAGUU- -5'
8960 3' -56.6 NC_002512.2 + 94622 0.66 0.934043
Target:  5'- cGGCCCa--GGCCuCGUCGAGCgCGg -3'
miRNA:   3'- cUCGGGaagCUGGuGCAGCUCGaGUu -5'
8960 3' -56.6 NC_002512.2 + 121609 0.66 0.923799
Target:  5'- aAGCCgaaCGACCcgAUGUCGAGCUCc- -3'
miRNA:   3'- cUCGGgaaGCUGG--UGCAGCUCGAGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.