miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8963 5' -56.9 NC_002512.2 + 159131 0.69 0.813041
Target:  5'- cAGAaGcGCGGCCgcuccaagugagGCGGCCGGGCGc -3'
miRNA:   3'- cUCUaCaUGCUGGa-----------CGCCGGCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 158972 0.67 0.902264
Target:  5'- cGAGcgGUucgGCGGCCa-CGGCgGGGCGGa -3'
miRNA:   3'- -CUCuaCA---UGCUGGacGCCGgCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 156498 0.67 0.896064
Target:  5'- uGGGcgGacacgGCGGCCUggGCGGCgGGGCGc -3'
miRNA:   3'- -CUCuaCa----UGCUGGA--CGCCGgCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 153419 0.69 0.846901
Target:  5'- cGAGGUGgcggaaugGCGGCaggcCGGCCGGGCGc -3'
miRNA:   3'- -CUCUACa-------UGCUGgac-GCCGGCCUGCu -5'
8963 5' -56.9 NC_002512.2 + 149502 0.68 0.876197
Target:  5'- cGGGUGgucaaaaGGCC-GCGGCCGGAgCGGg -3'
miRNA:   3'- cUCUACaug----CUGGaCGCCGGCCU-GCU- -5'
8963 5' -56.9 NC_002512.2 + 146938 0.66 0.948177
Target:  5'- ------cGCGACCUGCuGGCCGugaagcgcGACGAc -3'
miRNA:   3'- cucuacaUGCUGGACG-CCGGC--------CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 145556 0.66 0.943957
Target:  5'- cGAGGacgcgGCGACgCUGCGGCgCGcGACGc -3'
miRNA:   3'- -CUCUaca--UGCUG-GACGCCG-GC-CUGCu -5'
8963 5' -56.9 NC_002512.2 + 144649 0.71 0.705416
Target:  5'- cGGAUcUACGACCaccuguucGCGGuCCGGGCGAg -3'
miRNA:   3'- cUCUAcAUGCUGGa-------CGCC-GGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 142103 0.66 0.948177
Target:  5'- cGGAcccgGUAcCGACCcgucgGCGGCCGGAg-- -3'
miRNA:   3'- cUCUa---CAU-GCUGGa----CGCCGGCCUgcu -5'
8963 5' -56.9 NC_002512.2 + 139016 0.67 0.908247
Target:  5'- aGGggGUcCGACg-GCGGCgCGGACGGc -3'
miRNA:   3'- cUCuaCAuGCUGgaCGCCG-GCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 137039 0.68 0.889651
Target:  5'- aGGGGUGgcCGACCgggGaCGGCCagGGAgGAg -3'
miRNA:   3'- -CUCUACauGCUGGa--C-GCCGG--CCUgCU- -5'
8963 5' -56.9 NC_002512.2 + 133982 0.66 0.939519
Target:  5'- cGAGGUccucGU-CGGCaccCGGCCGGGCGAc -3'
miRNA:   3'- -CUCUA----CAuGCUGgacGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 133929 0.67 0.908247
Target:  5'- ---cUGUACGGCg-GCGGCCcGACGGc -3'
miRNA:   3'- cucuACAUGCUGgaCGCCGGcCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 133686 0.66 0.926947
Target:  5'- --cGUGgcCGACCUcGCGGCCgccucccggaccaccGGACGGu -3'
miRNA:   3'- cucUACauGCUGGA-CGCCGG---------------CCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 131733 0.69 0.814719
Target:  5'- cAGAcGcgGCGACCgccggggcggGCGGCCGcGACGAc -3'
miRNA:   3'- cUCUaCa-UGCUGGa---------CGCCGGC-CUGCU- -5'
8963 5' -56.9 NC_002512.2 + 130839 0.66 0.948177
Target:  5'- -cGcgGU-CGAguaCCgGCGGUCGGGCGAg -3'
miRNA:   3'- cuCuaCAuGCU---GGaCGCCGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 123726 0.66 0.929981
Target:  5'- uGGAccUGUGCucgGACCUGCggGGUCGGACc- -3'
miRNA:   3'- cUCU--ACAUG---CUGGACG--CCGGCCUGcu -5'
8963 5' -56.9 NC_002512.2 + 122676 0.7 0.788942
Target:  5'- cAGGUG-ACGGCgaGgGGCCcGGGCGAg -3'
miRNA:   3'- cUCUACaUGCUGgaCgCCGG-CCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 122632 0.72 0.666441
Target:  5'- cGAGuAUGgaaACGcACCUGCGuuucgaGCCGGACGAc -3'
miRNA:   3'- -CUC-UACa--UGC-UGGACGC------CGGCCUGCU- -5'
8963 5' -56.9 NC_002512.2 + 122016 0.7 0.761988
Target:  5'- aAGGUGacgACGGCCUccacGCGGuCCGGACa- -3'
miRNA:   3'- cUCUACa--UGCUGGA----CGCC-GGCCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.