miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 5' -57.5 NC_002512.2 + 150534 0.66 0.908247
Target:  5'- ---cGCGGCGGcCGCGAGGGuacgccgccGCGACc- -3'
miRNA:   3'- cugaUGCUGCU-GCGCUCCC---------CGCUGau -5'
8964 5' -57.5 NC_002512.2 + 226917 0.66 0.929981
Target:  5'- ---gACGACGGCGa-AGGGGCGGa-- -3'
miRNA:   3'- cugaUGCUGCUGCgcUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 97205 0.66 0.902264
Target:  5'- -uCUGCGGCGGCGgGccGGGCGGg-- -3'
miRNA:   3'- cuGAUGCUGCUGCgCucCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 11683 0.66 0.902264
Target:  5'- cGGCccgagGCGGgGGCcCGAGGGGCGAg-- -3'
miRNA:   3'- -CUGa----UGCUgCUGcGCUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 11730 0.66 0.908247
Target:  5'- aGGCUACGGgGACGaGGccGGGaGCGACg- -3'
miRNA:   3'- -CUGAUGCUgCUGCgCU--CCC-CGCUGau -5'
8964 5' -57.5 NC_002512.2 + 28493 0.66 0.914012
Target:  5'- gGACUucggGCGACugGACGCGgugauccaGGGGGUGAgCUGu -3'
miRNA:   3'- -CUGA----UGCUG--CUGCGC--------UCCCCGCU-GAU- -5'
8964 5' -57.5 NC_002512.2 + 44539 0.66 0.919012
Target:  5'- cGACgGCGAUGGCgGCGgccacccGGGcGGCGACg- -3'
miRNA:   3'- -CUGaUGCUGCUG-CGC-------UCC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 100281 0.66 0.902264
Target:  5'- aGCUcgGCGAgCGGgGCGAguucgucgGGGGCGACg- -3'
miRNA:   3'- cUGA--UGCU-GCUgCGCU--------CCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 100072 0.66 0.902264
Target:  5'- cGGCgcCGACGACgagaagagGCGgaAGGGGgGACUGc -3'
miRNA:   3'- -CUGauGCUGCUG--------CGC--UCCCCgCUGAU- -5'
8964 5' -57.5 NC_002512.2 + 133231 0.66 0.908247
Target:  5'- ---aGCGAgGACGgGAGGGcgGCGGCg- -3'
miRNA:   3'- cugaUGCUgCUGCgCUCCC--CGCUGau -5'
8964 5' -57.5 NC_002512.2 + 5576 0.66 0.908247
Target:  5'- ---gACGACGACaCGAGGuaaggugccGGCGACUc -3'
miRNA:   3'- cugaUGCUGCUGcGCUCC---------CCGCUGAu -5'
8964 5' -57.5 NC_002512.2 + 55665 0.66 0.914012
Target:  5'- cGACU-CGACGcCGgGcGGGGCG-CUGa -3'
miRNA:   3'- -CUGAuGCUGCuGCgCuCCCCGCuGAU- -5'
8964 5' -57.5 NC_002512.2 + 15131 0.66 0.908247
Target:  5'- gGACUGCGACGGCacgcuguuccGCGcAGGGGUuuuugaagcccgGGCg- -3'
miRNA:   3'- -CUGAUGCUGCUG----------CGC-UCCCCG------------CUGau -5'
8964 5' -57.5 NC_002512.2 + 9727 0.66 0.919557
Target:  5'- cGACgcagaGC-ACGACGCccuuGGGGGCGGCg- -3'
miRNA:   3'- -CUGa----UGcUGCUGCGc---UCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 45377 0.66 0.919557
Target:  5'- uGCUGCGACGAggaCGCGGGccGgGACUGu -3'
miRNA:   3'- cUGAUGCUGCU---GCGCUCccCgCUGAU- -5'
8964 5' -57.5 NC_002512.2 + 13022 0.66 0.919557
Target:  5'- ---aACGACGACGCGGacgacGaGGGCGAg-- -3'
miRNA:   3'- cugaUGCUGCUGCGCU-----C-CCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 57880 0.66 0.919557
Target:  5'- gGACcgGCGACGGCgGCGAc-GGCGACg- -3'
miRNA:   3'- -CUGa-UGCUGCUG-CGCUccCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 29004 0.66 0.92488
Target:  5'- cGCUGa-ACGACGUGGuGGGCGGCg- -3'
miRNA:   3'- cUGAUgcUGCUGCGCUcCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 81184 0.66 0.92488
Target:  5'- uGGCgcCGACGAUccggGCGaAGGcGGCGACg- -3'
miRNA:   3'- -CUGauGCUGCUG----CGC-UCC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 205075 0.66 0.919557
Target:  5'- uGGCUggagaGCGGCGGCGauccguccuCGGGGGGCG-Cg- -3'
miRNA:   3'- -CUGA-----UGCUGCUGC---------GCUCCCCGCuGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.