miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 5' -57.5 NC_002512.2 + 34923 0.68 0.823013
Target:  5'- gGACga-GACGACgGCGGGGucgcGGCGACg- -3'
miRNA:   3'- -CUGaugCUGCUG-CGCUCC----CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 44539 0.66 0.919012
Target:  5'- cGACgGCGAUGGCgGCGgccacccGGGcGGCGACg- -3'
miRNA:   3'- -CUGaUGCUGCUG-CGC-------UCC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 45377 0.66 0.919557
Target:  5'- uGCUGCGACGAggaCGCGGGccGgGACUGu -3'
miRNA:   3'- cUGAUGCUGCU---GCGCUCccCgCUGAU- -5'
8964 5' -57.5 NC_002512.2 + 49483 0.71 0.705416
Target:  5'- cGACUuCGACuACGCGAGGGaGCGGu-- -3'
miRNA:   3'- -CUGAuGCUGcUGCGCUCCC-CGCUgau -5'
8964 5' -57.5 NC_002512.2 + 50600 0.66 0.929981
Target:  5'- gGACUG-GACGGUGCGAuccGGGGaCGACa- -3'
miRNA:   3'- -CUGAUgCUGCUGCGCU---CCCC-GCUGau -5'
8964 5' -57.5 NC_002512.2 + 51273 0.69 0.780078
Target:  5'- -cCUACGugGACGCGGcgaccgagucGGcGGCGGCc- -3'
miRNA:   3'- cuGAUGCugCUGCGCU----------CC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 55665 0.66 0.914012
Target:  5'- cGACU-CGACGcCGgGcGGGGCG-CUGa -3'
miRNA:   3'- -CUGAuGCUGCuGCgCuCCCCGCuGAU- -5'
8964 5' -57.5 NC_002512.2 + 57045 0.67 0.869164
Target:  5'- cGCgucCGACGAC-CGGGGGGCGcCg- -3'
miRNA:   3'- cUGau-GCUGCUGcGCUCCCCGCuGau -5'
8964 5' -57.5 NC_002512.2 + 57880 0.66 0.919557
Target:  5'- gGACcgGCGACGGCgGCGAc-GGCGACg- -3'
miRNA:   3'- -CUGa-UGCUGCUG-CGCUccCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 57950 0.67 0.876197
Target:  5'- aGACggGCG-CGGCGCGGcGGGCGAa-- -3'
miRNA:   3'- -CUGa-UGCuGCUGCGCUcCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 74552 0.67 0.883027
Target:  5'- cGGCcGCGGCGACgggaGCGAGGuuGGCGAg-- -3'
miRNA:   3'- -CUGaUGCUGCUG----CGCUCC--CCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 75068 0.66 0.929981
Target:  5'- aGACcggGCGGCGACGuCGAGGcgccguuucGGgGGCUc -3'
miRNA:   3'- -CUGa--UGCUGCUGC-GCUCC---------CCgCUGAu -5'
8964 5' -57.5 NC_002512.2 + 75245 0.69 0.777394
Target:  5'- cGCUcgggACGGCGguuuuugaaaaagcGCGCGAGcGGGCGGCg- -3'
miRNA:   3'- cUGA----UGCUGC--------------UGCGCUC-CCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 75275 0.72 0.656613
Target:  5'- uGGCgGCGACGGCgGCGGcGGcGGCGACg- -3'
miRNA:   3'- -CUGaUGCUGCUG-CGCU-CC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 77824 0.66 0.919557
Target:  5'- cGAgUACGugcuCGACGCcGGGcGGCaGACUAu -3'
miRNA:   3'- -CUgAUGCu---GCUGCGcUCC-CCG-CUGAU- -5'
8964 5' -57.5 NC_002512.2 + 77939 0.68 0.831146
Target:  5'- aGACUACGAUG-CGCGAGucGCGAg-- -3'
miRNA:   3'- -CUGAUGCUGCuGCGCUCccCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 80679 0.71 0.670366
Target:  5'- cGGCgGCGGCGACGggggcgagcggcgucCGGGGGGCGAg-- -3'
miRNA:   3'- -CUGaUGCUGCUGC---------------GCUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 81184 0.66 0.92488
Target:  5'- uGGCgcCGACGAUccggGCGaAGGcGGCGACg- -3'
miRNA:   3'- -CUGauGCUGCUG----CGC-UCC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 81839 0.66 0.919557
Target:  5'- gGACgACGACGA-GCGAGGGGauuuuGCUc -3'
miRNA:   3'- -CUGaUGCUGCUgCGCUCCCCgc---UGAu -5'
8964 5' -57.5 NC_002512.2 + 81931 0.71 0.676243
Target:  5'- gGACgACGACGGCGagggcgGAGGGGcCGGCg- -3'
miRNA:   3'- -CUGaUGCUGCUGCg-----CUCCCC-GCUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.