Results 1 - 20 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8964 | 5' | -57.5 | NC_002512.2 | + | 55 | 0.69 | 0.77109 |
Target: 5'- gGGCUuuGCGGCGucggucgcggGCGCGAGGaGGCGAg-- -3' miRNA: 3'- -CUGA--UGCUGC----------UGCGCUCC-CCGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 3058 | 0.72 | 0.656613 |
Target: 5'- uGACgGCGGCgGACGCGGcGGcGGCGGCg- -3' miRNA: 3'- -CUGaUGCUG-CUGCGCU-CC-CCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 4567 | 0.7 | 0.734072 |
Target: 5'- cGGCUGCGGCGucuggggcgGCG-GAGGaGGCGGCg- -3' miRNA: 3'- -CUGAUGCUGC---------UGCgCUCC-CCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 5158 | 0.71 | 0.676243 |
Target: 5'- aACgGCaGCGGCGCGAccGGGGCGGCg- -3' miRNA: 3'- cUGaUGcUGCUGCGCU--CCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 5576 | 0.66 | 0.908247 |
Target: 5'- ---gACGACGACaCGAGGuaaggugccGGCGACUc -3' miRNA: 3'- cugaUGCUGCUGcGCUCC---------CCGCUGAu -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 6410 | 0.71 | 0.695739 |
Target: 5'- aGGCgGCGGCGGCGCuGGGGaaGGCGGCc- -3' miRNA: 3'- -CUGaUGCUGCUGCG-CUCC--CCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 7366 | 0.67 | 0.869164 |
Target: 5'- cGCgACGGCGGcCGCGGcGGGCGGCc- -3' miRNA: 3'- cUGaUGCUGCU-GCGCUcCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 9727 | 0.66 | 0.919557 |
Target: 5'- cGACgcagaGC-ACGACGCccuuGGGGGCGGCg- -3' miRNA: 3'- -CUGa----UGcUGCUGCGc---UCCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 10933 | 0.68 | 0.861934 |
Target: 5'- ----cCGGCGACG-GAGGGGuCGACg- -3' miRNA: 3'- cugauGCUGCUGCgCUCCCC-GCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 11683 | 0.66 | 0.902264 |
Target: 5'- cGGCccgagGCGGgGGCcCGAGGGGCGAg-- -3' miRNA: 3'- -CUGa----UGCUgCUGcGCUCCCCGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 11730 | 0.66 | 0.908247 |
Target: 5'- aGGCUACGGgGACGaGGccGGGaGCGACg- -3' miRNA: 3'- -CUGAUGCUgCUGCgCU--CCC-CGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 13022 | 0.66 | 0.919557 |
Target: 5'- ---aACGACGACGCGGacgacGaGGGCGAg-- -3' miRNA: 3'- cugaUGCUGCUGCGCU-----C-CCCGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 14322 | 0.68 | 0.831146 |
Target: 5'- aGGCguaGACGACGcCGAGGGcGcCGACg- -3' miRNA: 3'- -CUGaugCUGCUGC-GCUCCC-C-GCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 15131 | 0.66 | 0.908247 |
Target: 5'- gGACUGCGACGGCacgcuguuccGCGcAGGGGUuuuugaagcccgGGCg- -3' miRNA: 3'- -CUGAUGCUGCUG----------CGC-UCCCCG------------CUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 15454 | 0.67 | 0.876197 |
Target: 5'- cGACguagACGGgGACGCGGuccucGGGcGCGGCg- -3' miRNA: 3'- -CUGa---UGCUgCUGCGCU-----CCC-CGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 20885 | 0.68 | 0.854511 |
Target: 5'- cGGCgACGACGggggaagagGCGCGAGGacaGGCGAUa- -3' miRNA: 3'- -CUGaUGCUGC---------UGCGCUCC---CCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 24275 | 0.69 | 0.805418 |
Target: 5'- gGACggcgGCGACGGCaucccgcgggacaGCGGcGGGGCGaACUGc -3' miRNA: 3'- -CUGa---UGCUGCUG-------------CGCU-CCCCGC-UGAU- -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 28493 | 0.66 | 0.914012 |
Target: 5'- gGACUucggGCGACugGACGCGgugauccaGGGGGUGAgCUGu -3' miRNA: 3'- -CUGA----UGCUG--CUGCGC--------UCCCCGCU-GAU- -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 29004 | 0.66 | 0.92488 |
Target: 5'- cGCUGa-ACGACGUGGuGGGCGGCg- -3' miRNA: 3'- cUGAUgcUGCUGCGCUcCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 29744 | 0.69 | 0.814719 |
Target: 5'- ---gGCGGCG-CGCGAGGGGgccCGGCg- -3' miRNA: 3'- cugaUGCUGCuGCGCUCCCC---GCUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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