miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 5' -57.5 NC_002512.2 + 55 0.69 0.77109
Target:  5'- gGGCUuuGCGGCGucggucgcggGCGCGAGGaGGCGAg-- -3'
miRNA:   3'- -CUGA--UGCUGC----------UGCGCUCC-CCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 3058 0.72 0.656613
Target:  5'- uGACgGCGGCgGACGCGGcGGcGGCGGCg- -3'
miRNA:   3'- -CUGaUGCUG-CUGCGCU-CC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 4567 0.7 0.734072
Target:  5'- cGGCUGCGGCGucuggggcgGCG-GAGGaGGCGGCg- -3'
miRNA:   3'- -CUGAUGCUGC---------UGCgCUCC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 5158 0.71 0.676243
Target:  5'- aACgGCaGCGGCGCGAccGGGGCGGCg- -3'
miRNA:   3'- cUGaUGcUGCUGCGCU--CCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 5576 0.66 0.908247
Target:  5'- ---gACGACGACaCGAGGuaaggugccGGCGACUc -3'
miRNA:   3'- cugaUGCUGCUGcGCUCC---------CCGCUGAu -5'
8964 5' -57.5 NC_002512.2 + 6410 0.71 0.695739
Target:  5'- aGGCgGCGGCGGCGCuGGGGaaGGCGGCc- -3'
miRNA:   3'- -CUGaUGCUGCUGCG-CUCC--CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 7366 0.67 0.869164
Target:  5'- cGCgACGGCGGcCGCGGcGGGCGGCc- -3'
miRNA:   3'- cUGaUGCUGCU-GCGCUcCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 9727 0.66 0.919557
Target:  5'- cGACgcagaGC-ACGACGCccuuGGGGGCGGCg- -3'
miRNA:   3'- -CUGa----UGcUGCUGCGc---UCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 10933 0.68 0.861934
Target:  5'- ----cCGGCGACG-GAGGGGuCGACg- -3'
miRNA:   3'- cugauGCUGCUGCgCUCCCC-GCUGau -5'
8964 5' -57.5 NC_002512.2 + 11683 0.66 0.902264
Target:  5'- cGGCccgagGCGGgGGCcCGAGGGGCGAg-- -3'
miRNA:   3'- -CUGa----UGCUgCUGcGCUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 11730 0.66 0.908247
Target:  5'- aGGCUACGGgGACGaGGccGGGaGCGACg- -3'
miRNA:   3'- -CUGAUGCUgCUGCgCU--CCC-CGCUGau -5'
8964 5' -57.5 NC_002512.2 + 13022 0.66 0.919557
Target:  5'- ---aACGACGACGCGGacgacGaGGGCGAg-- -3'
miRNA:   3'- cugaUGCUGCUGCGCU-----C-CCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 14322 0.68 0.831146
Target:  5'- aGGCguaGACGACGcCGAGGGcGcCGACg- -3'
miRNA:   3'- -CUGaugCUGCUGC-GCUCCC-C-GCUGau -5'
8964 5' -57.5 NC_002512.2 + 15131 0.66 0.908247
Target:  5'- gGACUGCGACGGCacgcuguuccGCGcAGGGGUuuuugaagcccgGGCg- -3'
miRNA:   3'- -CUGAUGCUGCUG----------CGC-UCCCCG------------CUGau -5'
8964 5' -57.5 NC_002512.2 + 15454 0.67 0.876197
Target:  5'- cGACguagACGGgGACGCGGuccucGGGcGCGGCg- -3'
miRNA:   3'- -CUGa---UGCUgCUGCGCU-----CCC-CGCUGau -5'
8964 5' -57.5 NC_002512.2 + 20885 0.68 0.854511
Target:  5'- cGGCgACGACGggggaagagGCGCGAGGacaGGCGAUa- -3'
miRNA:   3'- -CUGaUGCUGC---------UGCGCUCC---CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 24275 0.69 0.805418
Target:  5'- gGACggcgGCGACGGCaucccgcgggacaGCGGcGGGGCGaACUGc -3'
miRNA:   3'- -CUGa---UGCUGCUG-------------CGCU-CCCCGC-UGAU- -5'
8964 5' -57.5 NC_002512.2 + 28493 0.66 0.914012
Target:  5'- gGACUucggGCGACugGACGCGgugauccaGGGGGUGAgCUGu -3'
miRNA:   3'- -CUGA----UGCUG--CUGCGC--------UCCCCGCU-GAU- -5'
8964 5' -57.5 NC_002512.2 + 29004 0.66 0.92488
Target:  5'- cGCUGa-ACGACGUGGuGGGCGGCg- -3'
miRNA:   3'- cUGAUgcUGCUGCGCUcCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 29744 0.69 0.814719
Target:  5'- ---gGCGGCG-CGCGAGGGGgccCGGCg- -3'
miRNA:   3'- cugaUGCUGCuGCGCUCCCC---GCUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.