miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 5' -57.5 NC_002512.2 + 229459 0.69 0.77109
Target:  5'- gGGCUuuGCGGCGucggucgcggGCGCGAGGaGGCGAg-- -3'
miRNA:   3'- -CUGA--UGCUGC----------UGCGCUCC-CCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 228488 0.66 0.92488
Target:  5'- gGAC--CGAaGACGCgGAGGGGCGAg-- -3'
miRNA:   3'- -CUGauGCUgCUGCG-CUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 228235 0.72 0.656613
Target:  5'- cGGCgggaaggGCGAacgugccgGACGCG-GGGGCGACUGa -3'
miRNA:   3'- -CUGa------UGCUg-------CUGCGCuCCCCGCUGAU- -5'
8964 5' -57.5 NC_002512.2 + 228013 0.66 0.92488
Target:  5'- gGACgggACG-CGGgaCGAGGGGCGACc- -3'
miRNA:   3'- -CUGa--UGCuGCUgcGCUCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 227934 0.66 0.929981
Target:  5'- cGACgccgGCgGACGAgGCGGGGGaGCG-Cg- -3'
miRNA:   3'- -CUGa---UG-CUGCUgCGCUCCC-CGCuGau -5'
8964 5' -57.5 NC_002512.2 + 227696 0.72 0.646768
Target:  5'- aGACgACGACGGCgGCGGGGGcGCGGu-- -3'
miRNA:   3'- -CUGaUGCUGCUG-CGCUCCC-CGCUgau -5'
8964 5' -57.5 NC_002512.2 + 227620 0.74 0.529713
Target:  5'- gGGCggGCGGCGGCgGCGAGGucaGGCGACg- -3'
miRNA:   3'- -CUGa-UGCUGCUG-CGCUCC---CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 226917 0.66 0.929981
Target:  5'- ---gACGACGGCGa-AGGGGCGGa-- -3'
miRNA:   3'- cugaUGCUGCUGCgcUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 226752 0.67 0.896064
Target:  5'- gGGCUccgGCcgGACGACGCGGaGGGCGAg-- -3'
miRNA:   3'- -CUGA---UG--CUGCUGCGCUcCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 226704 0.67 0.881
Target:  5'- ---cGCGGCGGCGuCGAGcgacgggaggccgcGGGCGACg- -3'
miRNA:   3'- cugaUGCUGCUGC-GCUC--------------CCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 226410 0.68 0.8612
Target:  5'- cGGCgGCGACGAUggagaugGCGAgaaaggaugagGGGGCGGCg- -3'
miRNA:   3'- -CUGaUGCUGCUG-------CGCU-----------CCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 225915 0.68 0.839111
Target:  5'- aGAC-GCGuCGAC-CGAGGGGaCGACg- -3'
miRNA:   3'- -CUGaUGCuGCUGcGCUCCCC-GCUGau -5'
8964 5' -57.5 NC_002512.2 + 225558 0.7 0.752778
Target:  5'- cGACUucuuCGGCGACGaggccgaccuCGAGGGGCGcCg- -3'
miRNA:   3'- -CUGAu---GCUGCUGC----------GCUCCCCGCuGau -5'
8964 5' -57.5 NC_002512.2 + 224805 0.66 0.92488
Target:  5'- cGACgccgGCGACGAcgaccaacgcCGCGGGcGGGCugGACg- -3'
miRNA:   3'- -CUGa---UGCUGCU----------GCGCUC-CCCG--CUGau -5'
8964 5' -57.5 NC_002512.2 + 223822 0.66 0.908247
Target:  5'- gGACgACGACGGCGCgucgGAGGGGaaggaggaGGCc- -3'
miRNA:   3'- -CUGaUGCUGCUGCG----CUCCCCg-------CUGau -5'
8964 5' -57.5 NC_002512.2 + 223716 0.68 0.839111
Target:  5'- --gUugGACGAC-CG-GGGGCGugUAu -3'
miRNA:   3'- cugAugCUGCUGcGCuCCCCGCugAU- -5'
8964 5' -57.5 NC_002512.2 + 223097 0.66 0.908247
Target:  5'- cGGCUGCGuCGACgGgGAGGGG-GAUc- -3'
miRNA:   3'- -CUGAUGCuGCUG-CgCUCCCCgCUGau -5'
8964 5' -57.5 NC_002512.2 + 222329 0.73 0.558502
Target:  5'- aGGCUGCGGCGGCGCcuccaggaggagGAGGaGCGGCa- -3'
miRNA:   3'- -CUGAUGCUGCUGCG------------CUCCcCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 220631 0.67 0.883027
Target:  5'- gGACUGCGACGACGuCGuccuGuGGcGCGAg-- -3'
miRNA:   3'- -CUGAUGCUGCUGC-GCu---C-CC-CGCUgau -5'
8964 5' -57.5 NC_002512.2 + 219464 0.75 0.47394
Target:  5'- cGACgGCGACGACGCGGucgugccccuGGGGCGGg-- -3'
miRNA:   3'- -CUGaUGCUGCUGCGCU----------CCCCGCUgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.