miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 5' -57.5 NC_002512.2 + 208474 1.06 0.005427
Target:  5'- gGACUACGACGACGCGAGGGGCGACUAc -3'
miRNA:   3'- -CUGAUGCUGCUGCGCUCCCCGCUGAU- -5'
8964 5' -57.5 NC_002512.2 + 196406 0.81 0.212008
Target:  5'- uGGC-GCGGgGACGCGGGGGGCGGCg- -3'
miRNA:   3'- -CUGaUGCUgCUGCGCUCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 140939 0.78 0.320234
Target:  5'- gGACgGCGACGAgGCGgaagGGGGGCGGCUc -3'
miRNA:   3'- -CUGaUGCUGCUgCGC----UCCCCGCUGAu -5'
8964 5' -57.5 NC_002512.2 + 212552 0.78 0.320234
Target:  5'- gGACgACGAUGACGaCGAcGGGGCGACg- -3'
miRNA:   3'- -CUGaUGCUGCUGC-GCU-CCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 192602 0.78 0.341853
Target:  5'- uGCUGCGGCGcGCGCGGcGGGCGACg- -3'
miRNA:   3'- cUGAUGCUGC-UGCGCUcCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 170791 0.76 0.40451
Target:  5'- cGGCgcgACGACGGCgGCGAGGGgaGCGACg- -3'
miRNA:   3'- -CUGa--UGCUGCUG-CGCUCCC--CGCUGau -5'
8964 5' -57.5 NC_002512.2 + 219464 0.75 0.47394
Target:  5'- cGACgGCGACGACGCGGucgugccccuGGGGCGGg-- -3'
miRNA:   3'- -CUGaUGCUGCUGCGCU----------CCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 122065 0.75 0.48304
Target:  5'- cGGCUGUGACGACaGCGGGGGcuGCGACa- -3'
miRNA:   3'- -CUGAUGCUGCUG-CGCUCCC--CGCUGau -5'
8964 5' -57.5 NC_002512.2 + 125130 0.75 0.48304
Target:  5'- cGACcgggACGACGGCGaCGAGGacGGCGACg- -3'
miRNA:   3'- -CUGa---UGCUGCUGC-GCUCC--CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 149725 0.74 0.510825
Target:  5'- cGACgACGGCGACaGCGAGGaGGaCGACg- -3'
miRNA:   3'- -CUGaUGCUGCUG-CGCUCC-CC-GCUGau -5'
8964 5' -57.5 NC_002512.2 + 133772 0.74 0.510825
Target:  5'- cGACgACGACGACGaCGAcGGcGGCGGCg- -3'
miRNA:   3'- -CUGaUGCUGCUGC-GCU-CC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 227620 0.74 0.529713
Target:  5'- gGGCggGCGGCGGCgGCGAGGucaGGCGACg- -3'
miRNA:   3'- -CUGa-UGCUGCUG-CGCUCC---CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 189884 0.73 0.548851
Target:  5'- cGGCggagACGGCGGCgGCGAGGacGGCGGCg- -3'
miRNA:   3'- -CUGa---UGCUGCUG-CGCUCC--CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 222329 0.73 0.558502
Target:  5'- aGGCUGCGGCGGCGCcuccaggaggagGAGGaGCGGCa- -3'
miRNA:   3'- -CUGAUGCUGCUGCG------------CUCCcCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 146709 0.72 0.636911
Target:  5'- cGACggaGACGACgGCGGGGcGGCGGCc- -3'
miRNA:   3'- -CUGaugCUGCUG-CGCUCC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 192644 0.72 0.646768
Target:  5'- cGGCaACGGCu-CGCG-GGGGCGGCUGc -3'
miRNA:   3'- -CUGaUGCUGcuGCGCuCCCCGCUGAU- -5'
8964 5' -57.5 NC_002512.2 + 227696 0.72 0.646768
Target:  5'- aGACgACGACGGCgGCGGGGGcGCGGu-- -3'
miRNA:   3'- -CUGaUGCUGCUG-CGCUCCC-CGCUgau -5'
8964 5' -57.5 NC_002512.2 + 228235 0.72 0.656613
Target:  5'- cGGCgggaaggGCGAacgugccgGACGCG-GGGGCGACUGa -3'
miRNA:   3'- -CUGa------UGCUg-------CUGCGCuCCCCGCUGAU- -5'
8964 5' -57.5 NC_002512.2 + 3058 0.72 0.656613
Target:  5'- uGACgGCGGCgGACGCGGcGGcGGCGGCg- -3'
miRNA:   3'- -CUGaUGCUG-CUGCGCU-CC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 75275 0.72 0.656613
Target:  5'- uGGCgGCGACGGCgGCGGcGGcGGCGACg- -3'
miRNA:   3'- -CUGaUGCUGCUG-CGCU-CC-CCGCUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.