miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 5' -57.5 NC_002512.2 + 51273 0.69 0.780078
Target:  5'- -cCUACGugGACGCGGcgaccgagucGGcGGCGGCc- -3'
miRNA:   3'- cuGAUGCugCUGCGCU----------CC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 86674 0.71 0.705416
Target:  5'- aGCggACGGCG-CGCGAGGGG-GACg- -3'
miRNA:   3'- cUGa-UGCUGCuGCGCUCCCCgCUGau -5'
8964 5' -57.5 NC_002512.2 + 118063 0.7 0.724591
Target:  5'- gGGCU-CGACucCGCGgaGGGGGCGGCUc -3'
miRNA:   3'- -CUGAuGCUGcuGCGC--UCCCCGCUGAu -5'
8964 5' -57.5 NC_002512.2 + 4567 0.7 0.734072
Target:  5'- cGGCUGCGGCGucuggggcgGCG-GAGGaGGCGGCg- -3'
miRNA:   3'- -CUGAUGCUGC---------UGCgCUCC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 55 0.69 0.77109
Target:  5'- gGGCUuuGCGGCGucggucgcggGCGCGAGGaGGCGAg-- -3'
miRNA:   3'- -CUGA--UGCUGC----------UGCGCUCC-CCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 97397 0.69 0.77109
Target:  5'- gGGCgggcGCGACGACGCGGaggccGGGGagaGACg- -3'
miRNA:   3'- -CUGa---UGCUGCUGCGCU-----CCCCg--CUGau -5'
8964 5' -57.5 NC_002512.2 + 229459 0.69 0.77109
Target:  5'- gGGCUuuGCGGCGucggucgcggGCGCGAGGaGGCGAg-- -3'
miRNA:   3'- -CUGA--UGCUGC----------UGCGCUCC-CCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 100216 0.69 0.77109
Target:  5'- gGGCUACGccgucgagGCGGCGuCGAcGGGCGGCg- -3'
miRNA:   3'- -CUGAUGC--------UGCUGC-GCUcCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 75245 0.69 0.777394
Target:  5'- cGCUcgggACGGCGguuuuugaaaaagcGCGCGAGcGGGCGGCg- -3'
miRNA:   3'- cUGA----UGCUGC--------------UGCGCUC-CCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 49483 0.71 0.705416
Target:  5'- cGACUuCGACuACGCGAGGGaGCGGu-- -3'
miRNA:   3'- -CUGAuGCUGcUGCGCUCCC-CGCUgau -5'
8964 5' -57.5 NC_002512.2 + 121895 0.71 0.695739
Target:  5'- gGACgcuCGGCGACGCGcGGGGaGCGAg-- -3'
miRNA:   3'- -CUGau-GCUGCUGCGC-UCCC-CGCUgau -5'
8964 5' -57.5 NC_002512.2 + 120774 0.71 0.695739
Target:  5'- gGACU-CGGCGGCcgucgGCG-GGGGCGGCg- -3'
miRNA:   3'- -CUGAuGCUGCUG-----CGCuCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 122065 0.75 0.48304
Target:  5'- cGGCUGUGACGACaGCGGGGGcuGCGACa- -3'
miRNA:   3'- -CUGAUGCUGCUG-CGCUCCC--CGCUGau -5'
8964 5' -57.5 NC_002512.2 + 133772 0.74 0.510825
Target:  5'- cGACgACGACGACGaCGAcGGcGGCGGCg- -3'
miRNA:   3'- -CUGaUGCUGCUGC-GCU-CC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 3058 0.72 0.656613
Target:  5'- uGACgGCGGCgGACGCGGcGGcGGCGGCg- -3'
miRNA:   3'- -CUGaUGCUG-CUGCGCU-CC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 80679 0.71 0.670366
Target:  5'- cGGCgGCGGCGACGggggcgagcggcgucCGGGGGGCGAg-- -3'
miRNA:   3'- -CUGaUGCUGCUGC---------------GCUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 81931 0.71 0.676243
Target:  5'- gGACgACGACGGCGagggcgGAGGGGcCGGCg- -3'
miRNA:   3'- -CUGaUGCUGCUGCg-----CUCCCC-GCUGau -5'
8964 5' -57.5 NC_002512.2 + 5158 0.71 0.676243
Target:  5'- aACgGCaGCGGCGCGAccGGGGCGGCg- -3'
miRNA:   3'- cUGaUGcUGCUGCGCU--CCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 104879 0.71 0.686012
Target:  5'- cGGCgcCGACGGCGCGAcGGGGCcggguccaggGACa- -3'
miRNA:   3'- -CUGauGCUGCUGCGCU-CCCCG----------CUGau -5'
8964 5' -57.5 NC_002512.2 + 6410 0.71 0.695739
Target:  5'- aGGCgGCGGCGGCGCuGGGGaaGGCGGCc- -3'
miRNA:   3'- -CUGaUGCUGCUGCG-CUCC--CCGCUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.