Results 1 - 20 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8964 | 5' | -57.5 | NC_002512.2 | + | 227934 | 0.66 | 0.929981 |
Target: 5'- cGACgccgGCgGACGAgGCGGGGGaGCG-Cg- -3' miRNA: 3'- -CUGa---UG-CUGCUgCGCUCCC-CGCuGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 223822 | 0.66 | 0.908247 |
Target: 5'- gGACgACGACGGCGCgucgGAGGGGaaggaggaGGCc- -3' miRNA: 3'- -CUGaUGCUGCUGCG----CUCCCCg-------CUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 148101 | 0.66 | 0.907659 |
Target: 5'- cGGCgGCGGCGGCGCcgaagacGAGGcGGCGGu-- -3' miRNA: 3'- -CUGaUGCUGCUGCG-------CUCC-CCGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 208474 | 1.06 | 0.005427 |
Target: 5'- gGACUACGACGACGCGAGGGGCGACUAc -3' miRNA: 3'- -CUGAUGCUGCUGCGCUCCCCGCUGAU- -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 157023 | 0.66 | 0.92488 |
Target: 5'- cGACaACGGCGACGCGGcccGGaGCGAg-- -3' miRNA: 3'- -CUGaUGCUGCUGCGCUc--CC-CGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 146640 | 0.66 | 0.92488 |
Target: 5'- aGCUGCuGGCGGCGaCGAGGaGGgaGGCUu -3' miRNA: 3'- cUGAUG-CUGCUGC-GCUCC-CCg-CUGAu -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 156451 | 0.66 | 0.92488 |
Target: 5'- gGGCUccgGgGGCGGCGgGggacucGGGGGCGGCg- -3' miRNA: 3'- -CUGA---UgCUGCUGCgC------UCCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 211942 | 0.66 | 0.92488 |
Target: 5'- gGACgucCGugGACGaGAGGGuCGGCUGc -3' miRNA: 3'- -CUGau-GCugCUGCgCUCCCcGCUGAU- -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 89628 | 0.66 | 0.919557 |
Target: 5'- gGACUGCgGACGAaGcCGAcGGGGCgGACg- -3' miRNA: 3'- -CUGAUG-CUGCUgC-GCU-CCCCG-CUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 150534 | 0.66 | 0.908247 |
Target: 5'- ---cGCGGCGGcCGCGAGGGuacgccgccGCGACc- -3' miRNA: 3'- cugaUGCUGCU-GCGCUCCC---------CGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 95834 | 0.66 | 0.919557 |
Target: 5'- ---gGCGACGGCccgcaggagGCcGGGGGCGGCg- -3' miRNA: 3'- cugaUGCUGCUG---------CGcUCCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 77824 | 0.66 | 0.919557 |
Target: 5'- cGAgUACGugcuCGACGCcGGGcGGCaGACUAu -3' miRNA: 3'- -CUgAUGCu---GCUGCGcUCC-CCG-CUGAU- -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 158827 | 0.66 | 0.929481 |
Target: 5'- -cCUGCGGgaggugcUGACGCGGGGGaGCGGg-- -3' miRNA: 3'- cuGAUGCU-------GCUGCGCUCCC-CGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 81839 | 0.66 | 0.919557 |
Target: 5'- gGACgACGACGA-GCGAGGGGauuuuGCUc -3' miRNA: 3'- -CUGaUGCUGCUgCGCUCCCCgc---UGAu -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 228488 | 0.66 | 0.92488 |
Target: 5'- gGAC--CGAaGACGCgGAGGGGCGAg-- -3' miRNA: 3'- -CUGauGCUgCUGCG-CUCCCCGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 173630 | 0.66 | 0.923833 |
Target: 5'- cGCcGCGGCGGCGaaccccgggucGGGGGCGGCg- -3' miRNA: 3'- cUGaUGCUGCUGCgc---------UCCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 223097 | 0.66 | 0.908247 |
Target: 5'- cGGCUGCGuCGACgGgGAGGGG-GAUc- -3' miRNA: 3'- -CUGAUGCuGCUG-CgCUCCCCgCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 194709 | 0.66 | 0.908247 |
Target: 5'- uACUG-GAgGACGCGgaggGGGGcGCGGCUGg -3' miRNA: 3'- cUGAUgCUgCUGCGC----UCCC-CGCUGAU- -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 224805 | 0.66 | 0.92488 |
Target: 5'- cGACgccgGCGACGAcgaccaacgcCGCGGGcGGGCugGACg- -3' miRNA: 3'- -CUGa---UGCUGCU----------GCGCUC-CCCG--CUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 228013 | 0.66 | 0.92488 |
Target: 5'- gGACgggACG-CGGgaCGAGGGGCGACc- -3' miRNA: 3'- -CUGa--UGCuGCUgcGCUCCCCGCUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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