Results 1 - 20 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8964 | 5' | -57.5 | NC_002512.2 | + | 15131 | 0.66 | 0.908247 |
Target: 5'- gGACUGCGACGGCacgcuguuccGCGcAGGGGUuuuugaagcccgGGCg- -3' miRNA: 3'- -CUGAUGCUGCUG----------CGC-UCCCCG------------CUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 97205 | 0.66 | 0.902264 |
Target: 5'- -uCUGCGGCGGCGgGccGGGCGGg-- -3' miRNA: 3'- cuGAUGCUGCUGCgCucCCCGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 81184 | 0.66 | 0.92488 |
Target: 5'- uGGCgcCGACGAUccggGCGaAGGcGGCGACg- -3' miRNA: 3'- -CUGauGCUGCUG----CGC-UCC-CCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 131734 | 0.66 | 0.929981 |
Target: 5'- aGAC-GCGGCGAcCGCcgGGGcGGGCGGCc- -3' miRNA: 3'- -CUGaUGCUGCU-GCG--CUC-CCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 226917 | 0.66 | 0.929981 |
Target: 5'- ---gACGACGGCGa-AGGGGCGGa-- -3' miRNA: 3'- cugaUGCUGCUGCgcUCCCCGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 75068 | 0.66 | 0.929981 |
Target: 5'- aGACcggGCGGCGACGuCGAGGcgccguuucGGgGGCUc -3' miRNA: 3'- -CUGa--UGCUGCUGC-GCUCC---------CCgCUGAu -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 100281 | 0.66 | 0.902264 |
Target: 5'- aGCUcgGCGAgCGGgGCGAguucgucgGGGGCGACg- -3' miRNA: 3'- cUGA--UGCU-GCUgCGCU--------CCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 55665 | 0.66 | 0.914012 |
Target: 5'- cGACU-CGACGcCGgGcGGGGCG-CUGa -3' miRNA: 3'- -CUGAuGCUGCuGCgCuCCCCGCuGAU- -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 44539 | 0.66 | 0.919012 |
Target: 5'- cGACgGCGAUGGCgGCGgccacccGGGcGGCGACg- -3' miRNA: 3'- -CUGaUGCUGCUG-CGC-------UCC-CCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 57880 | 0.66 | 0.919557 |
Target: 5'- gGACcgGCGACGGCgGCGAc-GGCGACg- -3' miRNA: 3'- -CUGa-UGCUGCUG-CGCUccCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 11730 | 0.66 | 0.908247 |
Target: 5'- aGGCUACGGgGACGaGGccGGGaGCGACg- -3' miRNA: 3'- -CUGAUGCUgCUGCgCU--CCC-CGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 9727 | 0.66 | 0.919557 |
Target: 5'- cGACgcagaGC-ACGACGCccuuGGGGGCGGCg- -3' miRNA: 3'- -CUGa----UGcUGCUGCGc---UCCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 28493 | 0.66 | 0.914012 |
Target: 5'- gGACUucggGCGACugGACGCGgugauccaGGGGGUGAgCUGu -3' miRNA: 3'- -CUGA----UGCUG--CUGCGC--------UCCCCGCU-GAU- -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 133231 | 0.66 | 0.908247 |
Target: 5'- ---aGCGAgGACGgGAGGGcgGCGGCg- -3' miRNA: 3'- cugaUGCUgCUGCgCUCCC--CGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 45377 | 0.66 | 0.919557 |
Target: 5'- uGCUGCGACGAggaCGCGGGccGgGACUGu -3' miRNA: 3'- cUGAUGCUGCU---GCGCUCccCgCUGAU- -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 13022 | 0.66 | 0.919557 |
Target: 5'- ---aACGACGACGCGGacgacGaGGGCGAg-- -3' miRNA: 3'- cugaUGCUGCUGCGCU-----C-CCCGCUgau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 5576 | 0.66 | 0.908247 |
Target: 5'- ---gACGACGACaCGAGGuaaggugccGGCGACUc -3' miRNA: 3'- cugaUGCUGCUGcGCUCC---------CCGCUGAu -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 100072 | 0.66 | 0.902264 |
Target: 5'- cGGCgcCGACGACgagaagagGCGgaAGGGGgGACUGc -3' miRNA: 3'- -CUGauGCUGCUG--------CGC--UCCCCgCUGAU- -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 29004 | 0.66 | 0.92488 |
Target: 5'- cGCUGa-ACGACGUGGuGGGCGGCg- -3' miRNA: 3'- cUGAUgcUGCUGCGCUcCCCGCUGau -5' |
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8964 | 5' | -57.5 | NC_002512.2 | + | 11683 | 0.66 | 0.902264 |
Target: 5'- cGGCccgagGCGGgGGCcCGAGGGGCGAg-- -3' miRNA: 3'- -CUGa----UGCUgCUGcGCUCCCCGCUgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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