miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8964 5' -57.5 NC_002512.2 + 160661 0.71 0.666441
Target:  5'- cGACcGCGGCGACGgGgauucGGGGGgGACUu -3'
miRNA:   3'- -CUGaUGCUGCUGCgC-----UCCCCgCUGAu -5'
8964 5' -57.5 NC_002512.2 + 92563 0.71 0.666441
Target:  5'- cGACgucggagGCGcCGACGCcgcggccggGAGGGGCGGCg- -3'
miRNA:   3'- -CUGa------UGCuGCUGCG---------CUCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 80679 0.71 0.670366
Target:  5'- cGGCgGCGGCGACGggggcgagcggcgucCGGGGGGCGAg-- -3'
miRNA:   3'- -CUGaUGCUGCUGC---------------GCUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 81931 0.71 0.676243
Target:  5'- gGACgACGACGGCGagggcgGAGGGGcCGGCg- -3'
miRNA:   3'- -CUGaUGCUGCUGCg-----CUCCCC-GCUGau -5'
8964 5' -57.5 NC_002512.2 + 5158 0.71 0.676243
Target:  5'- aACgGCaGCGGCGCGAccGGGGCGGCg- -3'
miRNA:   3'- cUGaUGcUGCUGCGCU--CCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 104879 0.71 0.686012
Target:  5'- cGGCgcCGACGGCGCGAcGGGGCcggguccaggGACa- -3'
miRNA:   3'- -CUGauGCUGCUGCGCU-CCCCG----------CUGau -5'
8964 5' -57.5 NC_002512.2 + 204651 0.71 0.694768
Target:  5'- gGACgGCGACG-CGCGGGGgaucgccGGCGGCUc -3'
miRNA:   3'- -CUGaUGCUGCuGCGCUCC-------CCGCUGAu -5'
8964 5' -57.5 NC_002512.2 + 6410 0.71 0.695739
Target:  5'- aGGCgGCGGCGGCGCuGGGGaaGGCGGCc- -3'
miRNA:   3'- -CUGaUGCUGCUGCG-CUCC--CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 120774 0.71 0.695739
Target:  5'- gGACU-CGGCGGCcgucgGCG-GGGGCGGCg- -3'
miRNA:   3'- -CUGAuGCUGCUG-----CGCuCCCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 191268 0.71 0.695739
Target:  5'- gGGCggggagGCGGCGACG-GGGaGGGCGGCg- -3'
miRNA:   3'- -CUGa-----UGCUGCUGCgCUC-CCCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 121895 0.71 0.695739
Target:  5'- gGACgcuCGGCGACGCGcGGGGaGCGAg-- -3'
miRNA:   3'- -CUGau-GCUGCUGCGC-UCCC-CGCUgau -5'
8964 5' -57.5 NC_002512.2 + 49483 0.71 0.705416
Target:  5'- cGACUuCGACuACGCGAGGGaGCGGu-- -3'
miRNA:   3'- -CUGAuGCUGcUGCGCUCCC-CGCUgau -5'
8964 5' -57.5 NC_002512.2 + 86674 0.71 0.705416
Target:  5'- aGCggACGGCG-CGCGAGGGG-GACg- -3'
miRNA:   3'- cUGa-UGCUGCuGCGCUCCCCgCUGau -5'
8964 5' -57.5 NC_002512.2 + 200356 0.71 0.705416
Target:  5'- gGACgggGgGACGGgGCGGGGGGUGAg-- -3'
miRNA:   3'- -CUGa--UgCUGCUgCGCUCCCCGCUgau -5'
8964 5' -57.5 NC_002512.2 + 118063 0.7 0.724591
Target:  5'- gGGCU-CGACucCGCGgaGGGGGCGGCUc -3'
miRNA:   3'- -CUGAuGCUGcuGCGC--UCCCCGCUGAu -5'
8964 5' -57.5 NC_002512.2 + 4567 0.7 0.734072
Target:  5'- cGGCUGCGGCGucuggggcgGCG-GAGGaGGCGGCg- -3'
miRNA:   3'- -CUGAUGCUGC---------UGCgCUCC-CCGCUGau -5'
8964 5' -57.5 NC_002512.2 + 225558 0.7 0.752778
Target:  5'- cGACUucuuCGGCGACGaggccgaccuCGAGGGGCGcCg- -3'
miRNA:   3'- -CUGAu---GCUGCUGC----------GCUCCCCGCuGau -5'
8964 5' -57.5 NC_002512.2 + 204708 0.7 0.761988
Target:  5'- cGACgucgGCGACGGCgggcccgggGCGGGGGGCcgGACc- -3'
miRNA:   3'- -CUGa---UGCUGCUG---------CGCUCCCCG--CUGau -5'
8964 5' -57.5 NC_002512.2 + 212581 0.69 0.770185
Target:  5'- cGACggcgGCGACGACGCGAuguccggagacgaGGaGGaCGACg- -3'
miRNA:   3'- -CUGa---UGCUGCUGCGCU-------------CC-CC-GCUGau -5'
8964 5' -57.5 NC_002512.2 + 55 0.69 0.77109
Target:  5'- gGGCUuuGCGGCGucggucgcggGCGCGAGGaGGCGAg-- -3'
miRNA:   3'- -CUGA--UGCUGC----------UGCGCUCC-CCGCUgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.