miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8965 5' -54.6 NC_002512.2 + 209171 0.66 0.980733
Target:  5'- cGGCAcGGcGCGcaagauccUCGugGACGAGGa -3'
miRNA:   3'- cUCGU-CCaCGCaa------AGCugCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 74668 0.68 0.936781
Target:  5'- -cGCGGGcGCGUUUCGGuucccuuCGACGAacGGUc -3'
miRNA:   3'- cuCGUCCaCGCAAAGCU-------GCUGCU--CCA- -5'
8965 5' -54.6 NC_002512.2 + 114764 0.69 0.921983
Target:  5'- --cCAGGUGCGcgggUCG-CGACGGGGc -3'
miRNA:   3'- cucGUCCACGCaa--AGCuGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 208360 1.08 0.007546
Target:  5'- gGAGCAGGUGCGUUUCGACGACGAGGUg -3'
miRNA:   3'- -CUCGUCCACGCAAAGCUGCUGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 193384 0.66 0.978569
Target:  5'- cGGGCGGGgacgacaccgaGUGUUUCuucauCGACGAGGa -3'
miRNA:   3'- -CUCGUCCa----------CGCAAAGcu---GCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 221392 0.66 0.978569
Target:  5'- cGGGCGGGgcgcggGCGgggaGGCGGCG-GGUc -3'
miRNA:   3'- -CUCGUCCa-----CGCaaagCUGCUGCuCCA- -5'
8965 5' -54.6 NC_002512.2 + 189893 0.66 0.976231
Target:  5'- cGGCGGcG-GCGaggaCGGCGGCGAGGa -3'
miRNA:   3'- cUCGUC-CaCGCaaa-GCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 184106 0.66 0.976231
Target:  5'- cGGCGGGUGCagUUCGcCcACGGGGg -3'
miRNA:   3'- cUCGUCCACGcaAAGCuGcUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 198005 0.66 0.971001
Target:  5'- cGAGCGGGcGaCGga-CGGgGGCGAGGg -3'
miRNA:   3'- -CUCGUCCaC-GCaaaGCUgCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 208562 0.68 0.939137
Target:  5'- aGGGC-GGUGCGUcaggccgagUCGACGcgcagcggguccgggACGAGGUc -3'
miRNA:   3'- -CUCGuCCACGCAa--------AGCUGC---------------UGCUCCA- -5'
8965 5' -54.6 NC_002512.2 + 97072 0.67 0.954427
Target:  5'- -uGCuGGGUGCGgaUCuucuuccggaagGACGGCGGGGg -3'
miRNA:   3'- cuCG-UCCACGCaaAG------------CUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 220613 0.66 0.97371
Target:  5'- cGAGCuGGUGCuGUgccgggacugCGACGACGucGUc -3'
miRNA:   3'- -CUCGuCCACG-CAaa--------GCUGCUGCucCA- -5'
8965 5' -54.6 NC_002512.2 + 199816 0.66 0.980733
Target:  5'- -cGCGGGgGCGgaUCGG-GugGAGGg -3'
miRNA:   3'- cuCGUCCaCGCaaAGCUgCugCUCCa -5'
8965 5' -54.6 NC_002512.2 + 67943 0.67 0.954427
Target:  5'- -uGCAGGUGaauucgacuaCGUUUCGAUGAUGucGUg -3'
miRNA:   3'- cuCGUCCAC----------GCAAAGCUGCUGCucCA- -5'
8965 5' -54.6 NC_002512.2 + 42875 0.66 0.980733
Target:  5'- cGAGCGGaUGCc---CGACGGCGuGGUg -3'
miRNA:   3'- -CUCGUCcACGcaaaGCUGCUGCuCCA- -5'
8965 5' -54.6 NC_002512.2 + 127091 0.66 0.976231
Target:  5'- gGAGCggAGGgcgGCGg--CGGCGGCGGGa- -3'
miRNA:   3'- -CUCG--UCCa--CGCaaaGCUGCUGCUCca -5'
8965 5' -54.6 NC_002512.2 + 205438 0.67 0.950471
Target:  5'- aGGCGccccaccGUGCGUUcgGACGACGAGGa -3'
miRNA:   3'- cUCGUc------CACGCAAagCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 165554 0.68 0.932396
Target:  5'- cGAGCuGGacUGCcaggUCGGCGACGuGGUg -3'
miRNA:   3'- -CUCGuCC--ACGcaa-AGCUGCUGCuCCA- -5'
8965 5' -54.6 NC_002512.2 + 105769 0.66 0.978569
Target:  5'- -cGCGGauaaccuggGCGUcgcauggUCGACGGCGAGGg -3'
miRNA:   3'- cuCGUCca-------CGCAa------AGCUGCUGCUCCa -5'
8965 5' -54.6 NC_002512.2 + 223095 0.66 0.976231
Target:  5'- -cGCGGcUGCG--UCGACGGgGAGGg -3'
miRNA:   3'- cuCGUCcACGCaaAGCUGCUgCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.