Results 21 - 40 of 363 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8966 | 3' | -61 | NC_002512.2 | + | 177011 | 0.75 | 0.302018 |
Target: 5'- cGUGGG-CGUCAGgGCCGCCugCGCGUCCc -3' miRNA: 3'- -CAUCCaGUGGUCgCGGCGG--GCGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 129988 | 0.75 | 0.315341 |
Target: 5'- -cGGGagCGCCggcGGCGCCgcguGCCCGUGUCCg -3' miRNA: 3'- caUCCa-GUGG---UCGCGG----CGGGCGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 158317 | 0.75 | 0.322168 |
Target: 5'- --cGGUCGuCCGGCGCgaGUCCGCGcUCCg -3' miRNA: 3'- cauCCAGU-GGUCGCGg-CGGGCGC-AGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 131989 | 0.75 | 0.33615 |
Target: 5'- -gAGGUCGCguGgGCCGCCCcggGCG-CCg -3' miRNA: 3'- caUCCAGUGguCgCGGCGGG---CGCaGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 164434 | 0.75 | 0.329104 |
Target: 5'- -cAGGUCGCCGGgaaGCCGCUCgGCGcCCu -3' miRNA: 3'- caUCCAGUGGUCg--CGGCGGG-CGCaGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 68165 | 0.75 | 0.322168 |
Target: 5'- uGUAGGUCAagacgaucCCGuCGCCGgCCGCGUCUc -3' miRNA: 3'- -CAUCCAGU--------GGUcGCGGCgGGCGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 212841 | 0.74 | 0.365423 |
Target: 5'- uUGGG-CGCgGGCGCCGUCCguccccuccgaGCGUCCc -3' miRNA: 3'- cAUCCaGUGgUCGCGGCGGG-----------CGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 186004 | 0.74 | 0.365423 |
Target: 5'- gGUGGGUCGuCCGGCaccuggaCGCCUGCGUCg -3' miRNA: 3'- -CAUCCAGU-GGUCGcg-----GCGGGCGCAGg -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 102229 | 0.74 | 0.379932 |
Target: 5'- -gAGGUCcUCGGCGCUcuguccgacccggGCCCGgGUCCg -3' miRNA: 3'- caUCCAGuGGUCGCGG-------------CGGGCgCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 105001 | 0.74 | 0.349838 |
Target: 5'- --cGGUCGCCgugacggGGcCGCCGCCCGguucuCGUCCg -3' miRNA: 3'- cauCCAGUGG-------UC-GCGGCGGGC-----GCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 106746 | 0.74 | 0.365423 |
Target: 5'- --cGGcC-CCGGCGgCGCuCCGCGUCCg -3' miRNA: 3'- cauCCaGuGGUCGCgGCG-GGCGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 128797 | 0.74 | 0.365423 |
Target: 5'- cUGGGUCuCCGGCGUgGUCCGCGggcgggCCc -3' miRNA: 3'- cAUCCAGuGGUCGCGgCGGGCGCa-----GG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 97332 | 0.74 | 0.350569 |
Target: 5'- -gGGGUCgagggcggagagGCCgacGGCGCCGCCCGCGg-- -3' miRNA: 3'- caUCCAG------------UGG---UCGCGGCGGGCGCagg -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 135743 | 0.73 | 0.429038 |
Target: 5'- -aGGGUCugCcucCGCCGCgucauCCGCGUCCu -3' miRNA: 3'- caUCCAGugGuc-GCGGCG-----GGCGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 4076 | 0.73 | 0.429038 |
Target: 5'- -gAGGUC-CCAGgccacccgGCCGCCCGCGgCCc -3' miRNA: 3'- caUCCAGuGGUCg-------CGGCGGGCGCaGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 31722 | 0.73 | 0.412524 |
Target: 5'- -gAGGUCcgccgGCCGGCGCCGaCCCG-GcCCg -3' miRNA: 3'- caUCCAG-----UGGUCGCGGC-GGGCgCaGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 145335 | 0.73 | 0.420732 |
Target: 5'- -gAGGUCgagcGCCucgccGCGCCGCCCGaCG-CCg -3' miRNA: 3'- caUCCAG----UGGu----CGCGGCGGGC-GCaGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 41239 | 0.73 | 0.404416 |
Target: 5'- -cGGGcCGCCGcCGCCGCCgGCGcCCu -3' miRNA: 3'- caUCCaGUGGUcGCGGCGGgCGCaGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 104258 | 0.73 | 0.411709 |
Target: 5'- aUGGGUCguguguggucgccGCCGGCGUCuuuCUCGCGUCCg -3' miRNA: 3'- cAUCCAG-------------UGGUCGCGGc--GGGCGCAGG- -5' |
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8966 | 3' | -61 | NC_002512.2 | + | 152071 | 0.73 | 0.404417 |
Target: 5'- --cGGUCAUCGcCGUccuagCGCCCGCGUCCc -3' miRNA: 3'- cauCCAGUGGUcGCG-----GCGGGCGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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