miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 40275 0.66 0.821316
Target:  5'- ----aUCGCguGCgGCCGCCCGCGcacgaacgucgUCCc -3'
miRNA:   3'- cauccAGUGguCG-CGGCGGGCGC-----------AGG- -5'
8966 3' -61 NC_002512.2 + 1870 0.66 0.821316
Target:  5'- --cGGUCGCCcc--UCGuCCCGCGUCCc -3'
miRNA:   3'- cauCCAGUGGucgcGGC-GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 121109 0.66 0.796563
Target:  5'- cGUAGaGUUcggugacgACCAGCcggaUCGCCCGCG-CCg -3'
miRNA:   3'- -CAUC-CAG--------UGGUCGc---GGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 44682 0.66 0.796563
Target:  5'- -cGGGcCACCgcGGCGUCGaccgccgCCGCGUUCu -3'
miRNA:   3'- caUCCaGUGG--UCGCGGCg------GGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 49448 0.66 0.779396
Target:  5'- ----aUgACgGGCGCCGCCCGgGgcgCCg -3'
miRNA:   3'- cauccAgUGgUCGCGGCGGGCgCa--GG- -5'
8966 3' -61 NC_002512.2 + 33473 0.66 0.821316
Target:  5'- -----aC-CCGGcCGCCGCCCcccGCGUCCc -3'
miRNA:   3'- cauccaGuGGUC-GCGGCGGG---CGCAGG- -5'
8966 3' -61 NC_002512.2 + 14569 0.66 0.821316
Target:  5'- -gAGGaaGCCGGUGCCguagucgccgcaGCCCGUcUCCc -3'
miRNA:   3'- caUCCagUGGUCGCGG------------CGGGCGcAGG- -5'
8966 3' -61 NC_002512.2 + 133930 0.66 0.804954
Target:  5'- uGUAcGG-CGgCGGC-CCgacgGCCCGCGUCCu -3'
miRNA:   3'- -CAU-CCaGUgGUCGcGG----CGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 107610 0.66 0.788042
Target:  5'- -cAGGagcagCACCAGCgagucgggcgGCUGCCCGUGgUUCg -3'
miRNA:   3'- caUCCa----GUGGUCG----------CGGCGGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 3448 0.66 0.813207
Target:  5'- --uGGUCGgugaCGGCGaCGaagguCCCGCGUCCg -3'
miRNA:   3'- cauCCAGUg---GUCGCgGC-----GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 115552 0.66 0.779396
Target:  5'- ---aGUCGCC--CGCCGCgCGCGUCa -3'
miRNA:   3'- caucCAGUGGucGCGGCGgGCGCAGg -5'
8966 3' -61 NC_002512.2 + 5519 0.66 0.794869
Target:  5'- -gAGGUC-CCGGaccgaggucucCCGCCCGCGaCCc -3'
miRNA:   3'- caUCCAGuGGUCgc---------GGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 126177 0.66 0.778525
Target:  5'- -cAGGaUCAUggCGGCGCC-CCCucccgccGCGUCCg -3'
miRNA:   3'- caUCC-AGUG--GUCGCGGcGGG-------CGCAGG- -5'
8966 3' -61 NC_002512.2 + 112796 0.66 0.788042
Target:  5'- -cGGGU--CCAGgGCgGCCCGCaccUCCa -3'
miRNA:   3'- caUCCAguGGUCgCGgCGGGCGc--AGG- -5'
8966 3' -61 NC_002512.2 + 121416 0.66 0.802451
Target:  5'- ---cGUCAcguucagcgcgaacCCGGCGCCGCCCGgGg-- -3'
miRNA:   3'- caucCAGU--------------GGUCGCGGCGGGCgCagg -5'
8966 3' -61 NC_002512.2 + 15646 0.66 0.812388
Target:  5'- --cGGcCGCgGGCggcgagccgacgaGCCGCCUGaCGUCCc -3'
miRNA:   3'- cauCCaGUGgUCG-------------CGGCGGGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 103479 0.66 0.821316
Target:  5'- -cGGGUC-UCGGCGgCGgCCGCGgaCCg -3'
miRNA:   3'- caUCCAGuGGUCGCgGCgGGCGCa-GG- -5'
8966 3' -61 NC_002512.2 + 96437 0.66 0.812388
Target:  5'- --cGGUUuaaauACC-GCGaucgaucCCGUCCGCGUCCg -3'
miRNA:   3'- cauCCAG-----UGGuCGC-------GGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 40364 0.66 0.821316
Target:  5'- -cGGG--GCCuGCGCCGCUCG-GUCUc -3'
miRNA:   3'- caUCCagUGGuCGCGGCGGGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 4335 0.66 0.782869
Target:  5'- ---cGUCGCCGaagaagucguccuccGCGCCuCCCGcCGUCCc -3'
miRNA:   3'- caucCAGUGGU---------------CGCGGcGGGC-GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.