miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 83768 0.66 0.782869
Target:  5'- -cAGGUgCAgaagaCGGCGCCGCcgccgccgccgaggaCCGCGUCg -3'
miRNA:   3'- caUCCA-GUg----GUCGCGGCG---------------GGCGCAGg -5'
8966 3' -61 NC_002512.2 + 115552 0.66 0.779396
Target:  5'- ---aGUCGCC--CGCCGCgCGCGUCa -3'
miRNA:   3'- caucCAGUGGucGCGGCGgGCGCAGg -5'
8966 3' -61 NC_002512.2 + 133930 0.66 0.804954
Target:  5'- uGUAcGG-CGgCGGC-CCgacgGCCCGCGUCCu -3'
miRNA:   3'- -CAU-CCaGUgGUCGcGG----CGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 97883 0.66 0.795717
Target:  5'- -gAGGUCcccCCGGCGCCcggggcgGCCCacGCGaCCu -3'
miRNA:   3'- caUCCAGu--GGUCGCGG-------CGGG--CGCaGG- -5'
8966 3' -61 NC_002512.2 + 107610 0.66 0.788042
Target:  5'- -cAGGagcagCACCAGCgagucgggcgGCUGCCCGUGgUUCg -3'
miRNA:   3'- caUCCa----GUGGUCG----------CGGCGGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 20531 0.66 0.788042
Target:  5'- --cGGUCGCCAGguCGCCGaCCuCGUaCCa -3'
miRNA:   3'- cauCCAGUGGUC--GCGGCgGGcGCA-GG- -5'
8966 3' -61 NC_002512.2 + 8045 0.66 0.796563
Target:  5'- --cGGUC-CCgaGGCGCC-CCCGCGggucggacgCCg -3'
miRNA:   3'- cauCCAGuGG--UCGCGGcGGGCGCa--------GG- -5'
8966 3' -61 NC_002512.2 + 104947 0.66 0.788042
Target:  5'- -cGGcGUCgGCgCGGCGCCgGCCuCGUGUCUc -3'
miRNA:   3'- caUC-CAG-UG-GUCGCGG-CGG-GCGCAGG- -5'
8966 3' -61 NC_002512.2 + 82699 0.66 0.796563
Target:  5'- -cGGcGUCcguGCgCGGCGCgGgCCCGCGuUCCg -3'
miRNA:   3'- caUC-CAG---UG-GUCGCGgC-GGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 44682 0.66 0.796563
Target:  5'- -cGGGcCACCgcGGCGUCGaccgccgCCGCGUUCu -3'
miRNA:   3'- caUCCaGUGG--UCGCGGCg------GGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 47698 0.66 0.804954
Target:  5'- -gGGGcgguguUCGCCAuccugcGCGCCGCCuCGCGg-- -3'
miRNA:   3'- caUCC------AGUGGU------CGCGGCGG-GCGCagg -5'
8966 3' -61 NC_002512.2 + 49448 0.66 0.779396
Target:  5'- ----aUgACgGGCGCCGCCCGgGgcgCCg -3'
miRNA:   3'- cauccAgUGgUCGCGGCGGGCgCa--GG- -5'
8966 3' -61 NC_002512.2 + 5519 0.66 0.794869
Target:  5'- -gAGGUC-CCGGaccgaggucucCCGCCCGCGaCCc -3'
miRNA:   3'- caUCCAGuGGUCgc---------GGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 4335 0.66 0.782869
Target:  5'- ---cGUCGCCGaagaagucguccuccGCGCCuCCCGcCGUCCc -3'
miRNA:   3'- caucCAGUGGU---------------CGCGGcGGGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 38847 0.66 0.782869
Target:  5'- --cGGUcCACguGCGCCGCgccCCGCcucgcaggcaccucgGUCCg -3'
miRNA:   3'- cauCCA-GUGguCGCGGCG---GGCG---------------CAGG- -5'
8966 3' -61 NC_002512.2 + 121416 0.66 0.802451
Target:  5'- ---cGUCAcguucagcgcgaacCCGGCGCCGCCCGgGg-- -3'
miRNA:   3'- caucCAGU--------------GGUCGCGGCGGGCgCagg -5'
8966 3' -61 NC_002512.2 + 112796 0.66 0.788042
Target:  5'- -cGGGU--CCAGgGCgGCCCGCaccUCCa -3'
miRNA:   3'- caUCCAguGGUCgCGgCGGGCGc--AGG- -5'
8966 3' -61 NC_002512.2 + 118632 0.66 0.788042
Target:  5'- -aAGcUCGuCCGcGUGCCGCCCGaCGcUCCg -3'
miRNA:   3'- caUCcAGU-GGU-CGCGGCGGGC-GC-AGG- -5'
8966 3' -61 NC_002512.2 + 121109 0.66 0.796563
Target:  5'- cGUAGaGUUcggugacgACCAGCcggaUCGCCCGCG-CCg -3'
miRNA:   3'- -CAUC-CAG--------UGGUCGc---GGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 126177 0.66 0.778525
Target:  5'- -cAGGaUCAUggCGGCGCC-CCCucccgccGCGUCCg -3'
miRNA:   3'- caUCC-AGUG--GUCGCGGcGGG-------CGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.