miRNA display CGI


Results 1 - 20 of 363 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 104258 0.73 0.411709
Target:  5'- aUGGGUCguguguggucgccGCCGGCGUCuuuCUCGCGUCCg -3'
miRNA:   3'- cAUCCAG-------------UGGUCGCGGc--GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 128797 0.74 0.365423
Target:  5'- cUGGGUCuCCGGCGUgGUCCGCGggcgggCCc -3'
miRNA:   3'- cAUCCAGuGGUCGCGgCGGGCGCa-----GG- -5'
8966 3' -61 NC_002512.2 + 106746 0.74 0.365423
Target:  5'- --cGGcC-CCGGCGgCGCuCCGCGUCCg -3'
miRNA:   3'- cauCCaGuGGUCGCgGCG-GGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 85327 0.73 0.388506
Target:  5'- cGUAGGUCGCCGGUuggaGCUuCCgCGCGUCg -3'
miRNA:   3'- -CAUCCAGUGGUCG----CGGcGG-GCGCAGg -5'
8966 3' -61 NC_002512.2 + 114805 0.73 0.388506
Target:  5'- -cGGGUgGCCAgGCGCCGCgCGaCGUUCc -3'
miRNA:   3'- caUCCAgUGGU-CGCGGCGgGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 137996 0.73 0.388506
Target:  5'- -cGGGccgugCGCCGcGcCGCCGCCCGCG-CCg -3'
miRNA:   3'- caUCCa----GUGGU-C-GCGGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 99229 0.73 0.391655
Target:  5'- uGUGGGUCGugcgcaucuggugccCCGGCGCCGUcaCCGaGUCCu -3'
miRNA:   3'- -CAUCCAGU---------------GGUCGCGGCG--GGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 70955 0.73 0.39641
Target:  5'- -gAGGcCGCCGGCGCC-CCCGCcgaagCCg -3'
miRNA:   3'- caUCCaGUGGUCGCGGcGGGCGca---GG- -5'
8966 3' -61 NC_002512.2 + 41239 0.73 0.404416
Target:  5'- -cGGGcCGCCGcCGCCGCCgGCGcCCu -3'
miRNA:   3'- caUCCaGUGGUcGCGGCGGgCGCaGG- -5'
8966 3' -61 NC_002512.2 + 97332 0.74 0.350569
Target:  5'- -gGGGUCgagggcggagagGCCgacGGCGCCGCCCGCGg-- -3'
miRNA:   3'- caUCCAG------------UGG---UCGCGGCGGGCGCagg -5'
8966 3' -61 NC_002512.2 + 105001 0.74 0.349838
Target:  5'- --cGGUCGCCgugacggGGcCGCCGCCCGguucuCGUCCg -3'
miRNA:   3'- cauCCAGUGG-------UC-GCGGCGGGC-----GCAGG- -5'
8966 3' -61 NC_002512.2 + 68165 0.75 0.322168
Target:  5'- uGUAGGUCAagacgaucCCGuCGCCGgCCGCGUCUc -3'
miRNA:   3'- -CAUCCAGU--------GGUcGCGGCgGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 69244 0.79 0.196639
Target:  5'- --cGGUCGauCCAGgGUCGUCCGCGUCCc -3'
miRNA:   3'- cauCCAGU--GGUCgCGGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 113532 0.78 0.220795
Target:  5'- -cGGGUCACCAG-GCCGCgggCCGCGUUg -3'
miRNA:   3'- caUCCAGUGGUCgCGGCG---GGCGCAGg -5'
8966 3' -61 NC_002512.2 + 60850 0.77 0.253073
Target:  5'- -gAGGagaUGCCGGCGCCGCUCGCGgacgCCg -3'
miRNA:   3'- caUCCa--GUGGUCGCGGCGGGCGCa---GG- -5'
8966 3' -61 NC_002512.2 + 120026 0.76 0.27062
Target:  5'- gGUAGGUCcCCAcCGCCGCCaCGCcgGUCCc -3'
miRNA:   3'- -CAUCCAGuGGUcGCGGCGG-GCG--CAGG- -5'
8966 3' -61 NC_002512.2 + 137252 0.76 0.27062
Target:  5'- -cGGGUC-CCGGCGCCGgcggCCGCcGUCCg -3'
miRNA:   3'- caUCCAGuGGUCGCGGCg---GGCG-CAGG- -5'
8966 3' -61 NC_002512.2 + 126380 0.76 0.282853
Target:  5'- --uGGUCACCAacGCGCUGCCCGgcgagcgGUCCg -3'
miRNA:   3'- cauCCAGUGGU--CGCGGCGGGCg------CAGG- -5'
8966 3' -61 NC_002512.2 + 128184 0.76 0.29552
Target:  5'- -gAGGUCGCCgAGCggGCCGCCgGCGggaCCg -3'
miRNA:   3'- caUCCAGUGG-UCG--CGGCGGgCGCa--GG- -5'
8966 3' -61 NC_002512.2 + 129988 0.75 0.315341
Target:  5'- -cGGGagCGCCggcGGCGCCgcguGCCCGUGUCCg -3'
miRNA:   3'- caUCCa-GUGG---UCGCGG----CGGGCGCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.