miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 165941 0.66 0.821316
Target:  5'- -cGGGUCuACCAGaaggaCGCCGgCCGCuUCa -3'
miRNA:   3'- caUCCAG-UGGUC-----GCGGCgGGCGcAGg -5'
8966 3' -61 NC_002512.2 + 207153 0.66 0.796563
Target:  5'- ----aUCGUCAGCaGCCGCCCGCGguagCUg -3'
miRNA:   3'- cauccAGUGGUCG-CGGCGGGCGCa---GG- -5'
8966 3' -61 NC_002512.2 + 196068 0.66 0.796563
Target:  5'- --uGGcCACCGGgGCCuucgcccuGCUCGCGcUCCu -3'
miRNA:   3'- cauCCaGUGGUCgCGG--------CGGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 206893 1.09 0.001574
Target:  5'- gGUAGGUCACCAGCGCCGCCCGCGUCCc -3'
miRNA:   3'- -CAUCCAGUGGUCGCGGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 180595 0.66 0.821316
Target:  5'- cGUGGcguccGUCACaCAGCGUCGgaguccgaguUCCGCGaUCCg -3'
miRNA:   3'- -CAUC-----CAGUG-GUCGCGGC----------GGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 217584 0.66 0.813207
Target:  5'- --cGGUcCGgCGGCGCCGCCUcggGgGUCg -3'
miRNA:   3'- cauCCA-GUgGUCGCGGCGGG---CgCAGg -5'
8966 3' -61 NC_002512.2 + 171918 0.66 0.812388
Target:  5'- aUAGGuucgucgcccucuUCGCC--CGCCGCgCCGCGcCCg -3'
miRNA:   3'- cAUCC-------------AGUGGucGCGGCG-GGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 96000 0.66 0.808272
Target:  5'- -cGGGacCGCCGGCcgagccgcuccucgaGCCGCCCcaggaCGUCCu -3'
miRNA:   3'- caUCCa-GUGGUCG---------------CGGCGGGc----GCAGG- -5'
8966 3' -61 NC_002512.2 + 120874 0.66 0.804954
Target:  5'- -cGGGUC-CgCAGgacgaCGCCGCCgGCG-CCg -3'
miRNA:   3'- caUCCAGuG-GUC-----GCGGCGGgCGCaGG- -5'
8966 3' -61 NC_002512.2 + 185331 0.66 0.796563
Target:  5'- ---cGUCugCGuCGCCGCCCGgGUggCCg -3'
miRNA:   3'- caucCAGugGUcGCGGCGGGCgCA--GG- -5'
8966 3' -61 NC_002512.2 + 107201 0.66 0.804954
Target:  5'- -cGGG-CACCAGCcggGCCGCggccggggagCCGCGgucaCCg -3'
miRNA:   3'- caUCCaGUGGUCG---CGGCG----------GGCGCa---GG- -5'
8966 3' -61 NC_002512.2 + 184677 0.66 0.804954
Target:  5'- --cGGUCGgCGGcCGuCCGCgCCGCcgGUCCc -3'
miRNA:   3'- cauCCAGUgGUC-GC-GGCG-GGCG--CAGG- -5'
8966 3' -61 NC_002512.2 + 103479 0.66 0.821316
Target:  5'- -cGGGUC-UCGGCGgCGgCCGCGgaCCg -3'
miRNA:   3'- caUCCAGuGGUCGCgGCgGGCGCa-GG- -5'
8966 3' -61 NC_002512.2 + 101696 0.66 0.804121
Target:  5'- --cGGUCccGCCGGCGgcCCGCUCGgcgaccuCGUCCc -3'
miRNA:   3'- cauCCAG--UGGUCGC--GGCGGGC-------GCAGG- -5'
8966 3' -61 NC_002512.2 + 192881 0.66 0.821316
Target:  5'- -gGGGaCGCauauaAGCGCCGUCgCGC-UCCg -3'
miRNA:   3'- caUCCaGUGg----UCGCGGCGG-GCGcAGG- -5'
8966 3' -61 NC_002512.2 + 190206 0.66 0.804954
Target:  5'- -aAGGUCGgCGGCGCgguCGUCCGgGacggCCa -3'
miRNA:   3'- caUCCAGUgGUCGCG---GCGGGCgCa---GG- -5'
8966 3' -61 NC_002512.2 + 220504 0.66 0.796563
Target:  5'- -gAGGcCgugGCCuGCGUCGCCCGgGaCCu -3'
miRNA:   3'- caUCCaG---UGGuCGCGGCGGGCgCaGG- -5'
8966 3' -61 NC_002512.2 + 199896 0.66 0.796563
Target:  5'- --uGGUCuCgAGa-CCGCCCGUGUCUg -3'
miRNA:   3'- cauCCAGuGgUCgcGGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 40364 0.66 0.821316
Target:  5'- -cGGG--GCCuGCGCCGCUCG-GUCUc -3'
miRNA:   3'- caUCCagUGGuCGCGGCGGGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 198962 0.66 0.813207
Target:  5'- --cGGUCGCgUGGCGUCGCgUCGCGugaugUCCg -3'
miRNA:   3'- cauCCAGUG-GUCGCGGCG-GGCGC-----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.