Results 21 - 40 of 363 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8966 | 3' | -61 | NC_002512.2 | + | 138959 | 0.66 | 0.788042 |
Target: 5'- cGgcGGccgCGCCGGCcCCGUUCGCGgCCg -3' miRNA: 3'- -CauCCa--GUGGUCGcGGCGGGCGCaGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 196068 | 0.66 | 0.796563 |
Target: 5'- --uGGcCACCGGgGCCuucgcccuGCUCGCGcUCCu -3' miRNA: 3'- cauCCaGUGGUCgCGG--------CGGGCGC-AGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 184677 | 0.66 | 0.804954 |
Target: 5'- --cGGUCGgCGGcCGuCCGCgCCGCcgGUCCc -3' miRNA: 3'- cauCCAGUgGUC-GC-GGCG-GGCG--CAGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 40364 | 0.66 | 0.821316 |
Target: 5'- -cGGG--GCCuGCGCCGCUCG-GUCUc -3' miRNA: 3'- caUCCagUGGuCGCGGCGGGCgCAGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 177125 | 0.66 | 0.779396 |
Target: 5'- -cGGGUgCGCCAGCaggGCC-CgCGCGUUCu -3' miRNA: 3'- caUCCA-GUGGUCG---CGGcGgGCGCAGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 149011 | 0.66 | 0.787183 |
Target: 5'- -gGGGcCGCC-GCGgaCCGCCCgacaccgagccccGCGUCCc -3' miRNA: 3'- caUCCaGUGGuCGC--GGCGGG-------------CGCAGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 207153 | 0.66 | 0.796563 |
Target: 5'- ----aUCGUCAGCaGCCGCCCGCGguagCUg -3' miRNA: 3'- cauccAGUGGUCG-CGGCGGGCGCa---GG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 192881 | 0.66 | 0.821316 |
Target: 5'- -gGGGaCGCauauaAGCGCCGUCgCGC-UCCg -3' miRNA: 3'- caUCCaGUGg----UCGCGGCGG-GCGcAGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 204666 | 0.66 | 0.788042 |
Target: 5'- -gGGGaUCGCCGGCgGCuCGCucCCGC-UCCg -3' miRNA: 3'- caUCC-AGUGGUCG-CG-GCG--GGCGcAGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 103479 | 0.66 | 0.821316 |
Target: 5'- -cGGGUC-UCGGCGgCGgCCGCGgaCCg -3' miRNA: 3'- caUCCAGuGGUCGCgGCgGGCGCa-GG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 199896 | 0.66 | 0.796563 |
Target: 5'- --uGGUCuCgAGa-CCGCCCGUGUCUg -3' miRNA: 3'- cauCCAGuGgUCgcGGCGGGCGCAGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 215065 | 0.66 | 0.788042 |
Target: 5'- ---cGUCGgCGGCGUCuaCCGCGUCg -3' miRNA: 3'- caucCAGUgGUCGCGGcgGGCGCAGg -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 101696 | 0.66 | 0.804121 |
Target: 5'- --cGGUCccGCCGGCGgcCCGCUCGgcgaccuCGUCCc -3' miRNA: 3'- cauCCAG--UGGUCGC--GGCGGGC-------GCAGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 120874 | 0.66 | 0.804954 |
Target: 5'- -cGGGUC-CgCAGgacgaCGCCGCCgGCG-CCg -3' miRNA: 3'- caUCCAGuG-GUC-----GCGGCGGgCGCaGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 171918 | 0.66 | 0.812388 |
Target: 5'- aUAGGuucgucgcccucuUCGCC--CGCCGCgCCGCGcCCg -3' miRNA: 3'- cAUCC-------------AGUGGucGCGGCG-GGCGCaGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 180595 | 0.66 | 0.821316 |
Target: 5'- cGUGGcguccGUCACaCAGCGUCGgaguccgaguUCCGCGaUCCg -3' miRNA: 3'- -CAUC-----CAGUG-GUCGCGGC----------GGGCGC-AGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 127820 | 0.67 | 0.770635 |
Target: 5'- -cGGGUC-CCGGCuccgggaggucGUCGgCgGCGUCCg -3' miRNA: 3'- caUCCAGuGGUCG-----------CGGCgGgCGCAGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 184539 | 0.66 | 0.77678 |
Target: 5'- -gGGGUCagccggcggcgcggGCCGGCGgacggcccuCCGaCCCGCGggCCg -3' miRNA: 3'- caUCCAG--------------UGGUCGC---------GGC-GGGCGCa-GG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 184809 | 0.66 | 0.779396 |
Target: 5'- -gGGGagACCcuuccGCGCCGgCCGCGacaccUCCa -3' miRNA: 3'- caUCCagUGGu----CGCGGCgGGCGC-----AGG- -5' |
|||||||
8966 | 3' | -61 | NC_002512.2 | + | 75139 | 0.66 | 0.787183 |
Target: 5'- --uGGUCACCgccaccgGGgGCgGauuCCCGUGUCCg -3' miRNA: 3'- cauCCAGUGG-------UCgCGgC---GGGCGCAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home