miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 177011 0.75 0.302018
Target:  5'- cGUGGG-CGUCAGgGCCGCCugCGCGUCCc -3'
miRNA:   3'- -CAUCCaGUGGUCgCGGCGG--GCGCAGG- -5'
8966 3' -61 NC_002512.2 + 129988 0.75 0.315341
Target:  5'- -cGGGagCGCCggcGGCGCCgcguGCCCGUGUCCg -3'
miRNA:   3'- caUCCa-GUGG---UCGCGG----CGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 158317 0.75 0.322168
Target:  5'- --cGGUCGuCCGGCGCgaGUCCGCGcUCCg -3'
miRNA:   3'- cauCCAGU-GGUCGCGg-CGGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 68165 0.75 0.322168
Target:  5'- uGUAGGUCAagacgaucCCGuCGCCGgCCGCGUCUc -3'
miRNA:   3'- -CAUCCAGU--------GGUcGCGGCgGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 164434 0.75 0.329104
Target:  5'- -cAGGUCGCCGGgaaGCCGCUCgGCGcCCu -3'
miRNA:   3'- caUCCAGUGGUCg--CGGCGGG-CGCaGG- -5'
8966 3' -61 NC_002512.2 + 131989 0.75 0.33615
Target:  5'- -gAGGUCGCguGgGCCGCCCcggGCG-CCg -3'
miRNA:   3'- caUCCAGUGguCgCGGCGGG---CGCaGG- -5'
8966 3' -61 NC_002512.2 + 105001 0.74 0.349838
Target:  5'- --cGGUCGCCgugacggGGcCGCCGCCCGguucuCGUCCg -3'
miRNA:   3'- cauCCAGUGG-------UC-GCGGCGGGC-----GCAGG- -5'
8966 3' -61 NC_002512.2 + 97332 0.74 0.350569
Target:  5'- -gGGGUCgagggcggagagGCCgacGGCGCCGCCCGCGg-- -3'
miRNA:   3'- caUCCAG------------UGG---UCGCGGCGGGCGCagg -5'
8966 3' -61 NC_002512.2 + 128797 0.74 0.365423
Target:  5'- cUGGGUCuCCGGCGUgGUCCGCGggcgggCCc -3'
miRNA:   3'- cAUCCAGuGGUCGCGgCGGGCGCa-----GG- -5'
8966 3' -61 NC_002512.2 + 212841 0.74 0.365423
Target:  5'- uUGGG-CGCgGGCGCCGUCCguccccuccgaGCGUCCc -3'
miRNA:   3'- cAUCCaGUGgUCGCGGCGGG-----------CGCAGG- -5'
8966 3' -61 NC_002512.2 + 106746 0.74 0.365423
Target:  5'- --cGGcC-CCGGCGgCGCuCCGCGUCCg -3'
miRNA:   3'- cauCCaGuGGUCGCgGCG-GGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 186004 0.74 0.365423
Target:  5'- gGUGGGUCGuCCGGCaccuggaCGCCUGCGUCg -3'
miRNA:   3'- -CAUCCAGU-GGUCGcg-----GCGGGCGCAGg -5'
8966 3' -61 NC_002512.2 + 102229 0.74 0.379932
Target:  5'- -gAGGUCcUCGGCGCUcuguccgacccggGCCCGgGUCCg -3'
miRNA:   3'- caUCCAGuGGUCGCGG-------------CGGGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 137996 0.73 0.388506
Target:  5'- -cGGGccgugCGCCGcGcCGCCGCCCGCG-CCg -3'
miRNA:   3'- caUCCa----GUGGU-C-GCGGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 85327 0.73 0.388506
Target:  5'- cGUAGGUCGCCGGUuggaGCUuCCgCGCGUCg -3'
miRNA:   3'- -CAUCCAGUGGUCG----CGGcGG-GCGCAGg -5'
8966 3' -61 NC_002512.2 + 105942 0.73 0.388506
Target:  5'- -aGGGUCccGCCGGCacgagucugacgGCCaGCCCGCcGUCCa -3'
miRNA:   3'- caUCCAG--UGGUCG------------CGG-CGGGCG-CAGG- -5'
8966 3' -61 NC_002512.2 + 114805 0.73 0.388506
Target:  5'- -cGGGUgGCCAgGCGCCGCgCGaCGUUCc -3'
miRNA:   3'- caUCCAgUGGU-CGCGGCGgGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 99229 0.73 0.391655
Target:  5'- uGUGGGUCGugcgcaucuggugccCCGGCGCCGUcaCCGaGUCCu -3'
miRNA:   3'- -CAUCCAGU---------------GGUCGCGGCG--GGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 70955 0.73 0.39641
Target:  5'- -gAGGcCGCCGGCGCC-CCCGCcgaagCCg -3'
miRNA:   3'- caUCCaGUGGUCGCGGcGGGCGca---GG- -5'
8966 3' -61 NC_002512.2 + 41239 0.73 0.404416
Target:  5'- -cGGGcCGCCGcCGCCGCCgGCGcCCu -3'
miRNA:   3'- caUCCaGUGGUcGCGGCGGgCGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.