miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 206893 1.09 0.001574
Target:  5'- gGUAGGUCACCAGCGCCGCCCGCGUCCc -3'
miRNA:   3'- -CAUCCAGUGGUCGCGGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 81766 0.8 0.151509
Target:  5'- cGUGGGUCACCAcCGCCGCCU-CGUCUu -3'
miRNA:   3'- -CAUCCAGUGGUcGCGGCGGGcGCAGG- -5'
8966 3' -61 NC_002512.2 + 90395 0.8 0.155189
Target:  5'- -gAGGUCuuGCCGGCGCCGgCCGUGcCCg -3'
miRNA:   3'- caUCCAG--UGGUCGCGGCgGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 157081 0.79 0.18764
Target:  5'- -gGGGUCGCCGGCGCCcacggcggGCCCGUcccggcgacGUCCc -3'
miRNA:   3'- caUCCAGUGGUCGCGG--------CGGGCG---------CAGG- -5'
8966 3' -61 NC_002512.2 + 213679 0.79 0.192093
Target:  5'- -aGGGgagC-CCGGCGUCGCCCGCgGUCCu -3'
miRNA:   3'- caUCCa--GuGGUCGCGGCGGGCG-CAGG- -5'
8966 3' -61 NC_002512.2 + 69244 0.79 0.196639
Target:  5'- --cGGUCGauCCAGgGUCGUCCGCGUCCc -3'
miRNA:   3'- cauCCAGU--GGUCgCGGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 149160 0.78 0.210842
Target:  5'- -cGGG--GCCGGUGCCGCCCGCGggcCCg -3'
miRNA:   3'- caUCCagUGGUCGCGGCGGGCGCa--GG- -5'
8966 3' -61 NC_002512.2 + 113532 0.78 0.220795
Target:  5'- -cGGGUCACCAG-GCCGCgggCCGCGUUg -3'
miRNA:   3'- caUCCAGUGGUCgCGGCG---GGCGCAGg -5'
8966 3' -61 NC_002512.2 + 33092 0.77 0.236473
Target:  5'- --cGGUCAUCGGgaccauaucuCGCUGUCCGCGUCCg -3'
miRNA:   3'- cauCCAGUGGUC----------GCGGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 99894 0.77 0.241903
Target:  5'- -cGGG-CACgCGGCGCCGCCgGCGcUCCc -3'
miRNA:   3'- caUCCaGUG-GUCGCGGCGGgCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 96286 0.77 0.247436
Target:  5'- cGUAGGUCcgcaggagGCCGGC-CCGCUCGgGUCCc -3'
miRNA:   3'- -CAUCCAG--------UGGUCGcGGCGGGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 175583 0.77 0.247436
Target:  5'- -cGGGUCACCAcGuCGCCGUgCGgGUCCu -3'
miRNA:   3'- caUCCAGUGGU-C-GCGGCGgGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 60850 0.77 0.253073
Target:  5'- -gAGGagaUGCCGGCGCCGCUCGCGgacgCCg -3'
miRNA:   3'- caUCCa--GUGGUCGCGGCGGGCGCa---GG- -5'
8966 3' -61 NC_002512.2 + 186626 0.76 0.264665
Target:  5'- -cAGGagACCAGCucGCUGCCCGCGggCCa -3'
miRNA:   3'- caUCCagUGGUCG--CGGCGGGCGCa-GG- -5'
8966 3' -61 NC_002512.2 + 120026 0.76 0.27062
Target:  5'- gGUAGGUCcCCAcCGCCGCCaCGCcgGUCCc -3'
miRNA:   3'- -CAUCCAGuGGUcGCGGCGG-GCG--CAGG- -5'
8966 3' -61 NC_002512.2 + 137252 0.76 0.27062
Target:  5'- -cGGGUC-CCGGCGCCGgcggCCGCcGUCCg -3'
miRNA:   3'- caUCCAGuGGUCGCGGCg---GGCG-CAGG- -5'
8966 3' -61 NC_002512.2 + 126380 0.76 0.282853
Target:  5'- --uGGUCACCAacGCGCUGCCCGgcgagcgGUCCg -3'
miRNA:   3'- cauCCAGUGGU--CGCGGCGGGCg------CAGG- -5'
8966 3' -61 NC_002512.2 + 92634 0.76 0.282853
Target:  5'- cGgcGGcCGCCGGCGCCGggaCCCGCGcggaUCCg -3'
miRNA:   3'- -CauCCaGUGGUCGCGGC---GGGCGC----AGG- -5'
8966 3' -61 NC_002512.2 + 169562 0.76 0.29552
Target:  5'- cGUGGccuUCGCCGGCGUC-UCCGCGUCCg -3'
miRNA:   3'- -CAUCc--AGUGGUCGCGGcGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 128184 0.76 0.29552
Target:  5'- -gAGGUCGCCgAGCggGCCGCCgGCGggaCCg -3'
miRNA:   3'- caUCCAGUGG-UCG--CGGCGGgCGCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.