miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 1142 0.69 0.649598
Target:  5'- ----uUCGCUuaucucCGCCGUCCGCGUCCg -3'
miRNA:   3'- cauccAGUGGuc----GCGGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 1330 0.68 0.697266
Target:  5'- -aAGGaagCGuCCGGCuGCCGUCCGCcUCCc -3'
miRNA:   3'- caUCCa--GU-GGUCG-CGGCGGGCGcAGG- -5'
8966 3' -61 NC_002512.2 + 1626 0.71 0.498727
Target:  5'- --cGGUCcgcggUCAGuCGCC-CCCGCGUCCg -3'
miRNA:   3'- cauCCAGu----GGUC-GCGGcGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 1704 0.71 0.526151
Target:  5'- aGUAGGUCucccggaCGGUGCCGCucCCGC-UCCg -3'
miRNA:   3'- -CAUCCAGug-----GUCGCGGCG--GGCGcAGG- -5'
8966 3' -61 NC_002512.2 + 1870 0.66 0.821316
Target:  5'- --cGGUCGCCcc--UCGuCCCGCGUCCc -3'
miRNA:   3'- cauCCAGUGGucgcGGC-GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 2120 0.67 0.761764
Target:  5'- --cGGUCGCgGGCGUCGa--GCGUUCg -3'
miRNA:   3'- cauCCAGUGgUCGCGGCgggCGCAGG- -5'
8966 3' -61 NC_002512.2 + 2214 0.71 0.516944
Target:  5'- --cGGUCGCCGGCGgCGCCgcCGCucuUCCu -3'
miRNA:   3'- cauCCAGUGGUCGCgGCGG--GCGc--AGG- -5'
8966 3' -61 NC_002512.2 + 2270 0.68 0.678292
Target:  5'- ----cUCGCCGcCGCCGCCCGCccUCCg -3'
miRNA:   3'- cauccAGUGGUcGCGGCGGGCGc-AGG- -5'
8966 3' -61 NC_002512.2 + 3094 0.67 0.743728
Target:  5'- cGgcGGcCGagaccaCGGCGUCGCCCGagaCGUCCu -3'
miRNA:   3'- -CauCCaGUg-----GUCGCGGCGGGC---GCAGG- -5'
8966 3' -61 NC_002512.2 + 3157 0.71 0.498727
Target:  5'- --cGGUCccGCCGuCGUCGCCCGCGgCCu -3'
miRNA:   3'- cauCCAG--UGGUcGCGGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 3448 0.66 0.813207
Target:  5'- --uGGUCGgugaCGGCGaCGaagguCCCGCGUCCg -3'
miRNA:   3'- cauCCAGUg---GUCGCgGC-----GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 3496 0.67 0.761764
Target:  5'- -cGGGUC-CCGGCGCCGUCgucgGCccUCCa -3'
miRNA:   3'- caUCCAGuGGUCGCGGCGGg---CGc-AGG- -5'
8966 3' -61 NC_002512.2 + 3705 0.66 0.821316
Target:  5'- -gAGGUCGacCCGGuCGCUcCCCGgGUCg -3'
miRNA:   3'- caUCCAGU--GGUC-GCGGcGGGCgCAGg -5'
8966 3' -61 NC_002512.2 + 4076 0.73 0.429038
Target:  5'- -gAGGUC-CCAGgccacccgGCCGCCCGCGgCCc -3'
miRNA:   3'- caUCCAGuGGUCg-------CGGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 4335 0.66 0.782869
Target:  5'- ---cGUCGCCGaagaagucguccuccGCGCCuCCCGcCGUCCc -3'
miRNA:   3'- caucCAGUGGU---------------CGCGGcGGGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 4538 0.69 0.620794
Target:  5'- --cGGaCACCAauaccCGgauuCCGCCCGCGUCCg -3'
miRNA:   3'- cauCCaGUGGUc----GC----GGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 5053 0.68 0.706684
Target:  5'- -gAGGUauacgcguCCAGC-CCGCCCGCGg-- -3'
miRNA:   3'- caUCCAgu------GGUCGcGGCGGGCGCagg -5'
8966 3' -61 NC_002512.2 + 5519 0.66 0.794869
Target:  5'- -gAGGUC-CCGGaccgaggucucCCGCCCGCGaCCc -3'
miRNA:   3'- caUCCAGuGGUCgc---------GGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 5633 0.68 0.716048
Target:  5'- -cGGG-CGuCgGGCGCCGaCCCGCcUCCc -3'
miRNA:   3'- caUCCaGU-GgUCGCGGC-GGGCGcAGG- -5'
8966 3' -61 NC_002512.2 + 5676 0.68 0.668751
Target:  5'- --uGGaaaaCGCCccGGCGUC-CCCGCGUCCg -3'
miRNA:   3'- cauCCa---GUGG--UCGCGGcGGGCGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.