miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 227658 0.72 0.471957
Target:  5'- -cGGGUCcggaggaagagcGgCGGCGCCGCCgGCGaCCg -3'
miRNA:   3'- caUCCAG------------UgGUCGCGGCGGgCGCaGG- -5'
8966 3' -61 NC_002512.2 + 227446 0.69 0.659184
Target:  5'- --cGGUCACCuucGCGCUGCCgGgGgagaggCCg -3'
miRNA:   3'- cauCCAGUGGu--CGCGGCGGgCgCa-----GG- -5'
8966 3' -61 NC_002512.2 + 227363 0.72 0.463196
Target:  5'- -gAGGagGcCCGGgGCCGCCgGCGUCg -3'
miRNA:   3'- caUCCagU-GGUCgCGGCGGgCGCAGg -5'
8966 3' -61 NC_002512.2 + 227087 0.72 0.445935
Target:  5'- -cGGGUCccGCCGGcCGCCGgCCGgGUCg -3'
miRNA:   3'- caUCCAG--UGGUC-GCGGCgGGCgCAGg -5'
8966 3' -61 NC_002512.2 + 226819 0.73 0.429038
Target:  5'- --uGGcCGCCGcCGCCG-CCGCGUCCg -3'
miRNA:   3'- cauCCaGUGGUcGCGGCgGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 226670 0.67 0.759083
Target:  5'- -cGGGUCcagacucucugagcGCCGGgcCGUCGCCCGCGg-- -3'
miRNA:   3'- caUCCAG--------------UGGUC--GCGGCGGGCGCagg -5'
8966 3' -61 NC_002512.2 + 226389 0.67 0.761764
Target:  5'- -aGGGcCGacgaCGGCGCCGggaCCCgucGCGUCCg -3'
miRNA:   3'- caUCCaGUg---GUCGCGGC---GGG---CGCAGG- -5'
8966 3' -61 NC_002512.2 + 225595 0.67 0.761764
Target:  5'- -cGGGUCuucgACCAGCugGCCGU-CGuCGUCCg -3'
miRNA:   3'- caUCCAG----UGGUCG--CGGCGgGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 225468 0.69 0.611199
Target:  5'- --cGGUCuACCAGCaGCCGCcgucgaCCGCGaUCUa -3'
miRNA:   3'- cauCCAG-UGGUCG-CGGCG------GGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 225427 0.67 0.734577
Target:  5'- -cGGGUUgggGCCGaCGCCGaccCCCGCGcCCg -3'
miRNA:   3'- caUCCAG---UGGUcGCGGC---GGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 224938 0.69 0.649598
Target:  5'- -cGGGUCcguGCCGGUGUCGCUCGgcUCCg -3'
miRNA:   3'- caUCCAG---UGGUCGCGGCGGGCgcAGG- -5'
8966 3' -61 NC_002512.2 + 224714 0.67 0.761764
Target:  5'- cUGGG--GCCGGcCGCCGCCCcggucGCG-CCg -3'
miRNA:   3'- cAUCCagUGGUC-GCGGCGGG-----CGCaGG- -5'
8966 3' -61 NC_002512.2 + 224630 0.68 0.697266
Target:  5'- -gGGGUCGCCGcCGCgGCCucggccuaCGCGcCCg -3'
miRNA:   3'- caUCCAGUGGUcGCGgCGG--------GCGCaGG- -5'
8966 3' -61 NC_002512.2 + 223066 0.69 0.64
Target:  5'- --uGGUCGCCAccGUgGCCGagaCCCGgGUCCg -3'
miRNA:   3'- cauCCAGUGGU--CG-CGGC---GGGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 222444 0.67 0.743728
Target:  5'- -aAGcGUCGCguGCGCCGUUCuCGUCg -3'
miRNA:   3'- caUC-CAGUGguCGCGGCGGGcGCAGg -5'
8966 3' -61 NC_002512.2 + 222421 0.7 0.582521
Target:  5'- -cGGGg-GCCGGCaGCCGCgCCGCGgcuUCCc -3'
miRNA:   3'- caUCCagUGGUCG-CGGCG-GGCGC---AGG- -5'
8966 3' -61 NC_002512.2 + 221029 0.67 0.743728
Target:  5'- --cGGcCACCAacgggGUGCCGCCCGgcagcgagccCGUCUg -3'
miRNA:   3'- cauCCaGUGGU-----CGCGGCGGGC----------GCAGG- -5'
8966 3' -61 NC_002512.2 + 220504 0.66 0.796563
Target:  5'- -gAGGcCgugGCCuGCGUCGCCCGgGaCCu -3'
miRNA:   3'- caUCCaG---UGGuCGCGGCGGGCgCaGG- -5'
8966 3' -61 NC_002512.2 + 219349 0.66 0.821316
Target:  5'- -cAGGUCAUUugauUGCaCGCUCGCGUUCa -3'
miRNA:   3'- caUCCAGUGGuc--GCG-GCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 219335 0.68 0.668751
Target:  5'- -cGGcGUgGCCcGCcgGCUGCCCGgCGUCCg -3'
miRNA:   3'- caUC-CAgUGGuCG--CGGCGGGC-GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.