miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 218872 0.69 0.659184
Target:  5'- -gGGG-CACCGaCGCCGUgCGCGcCCu -3'
miRNA:   3'- caUCCaGUGGUcGCGGCGgGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 218593 0.66 0.804954
Target:  5'- -gAGGUCuccCCGGgGUcuCGCCCGCGg-- -3'
miRNA:   3'- caUCCAGu--GGUCgCG--GCGGGCGCagg -5'
8966 3' -61 NC_002512.2 + 218476 0.7 0.554125
Target:  5'- --cGGUCAucuccucgucCCGcGgGUCGUCCGCGUCCg -3'
miRNA:   3'- cauCCAGU----------GGU-CgCGGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 218297 0.71 0.526152
Target:  5'- -gGGGUCcCCGGCccugggcgGCCGCUCGUGcUCCc -3'
miRNA:   3'- caUCCAGuGGUCG--------CGGCGGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 217584 0.66 0.813207
Target:  5'- --cGGUcCGgCGGCGCCGCCUcggGgGUCg -3'
miRNA:   3'- cauCCA-GUgGUCGCGGCGGG---CgCAGg -5'
8966 3' -61 NC_002512.2 + 217200 0.66 0.779396
Target:  5'- -cAGGuugcgcauccUCGCCAGC-CgGCCCGUG-CCg -3'
miRNA:   3'- caUCC----------AGUGGUCGcGgCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 216847 0.69 0.646719
Target:  5'- ----aUCACCAGCGUgaucucgcccucguCGUCCGCGUCg -3'
miRNA:   3'- cauccAGUGGUCGCG--------------GCGGGCGCAGg -5'
8966 3' -61 NC_002512.2 + 216309 0.67 0.761764
Target:  5'- cGUGGGUCACCuGCaucuGCgGCCCcgacGCGgUCg -3'
miRNA:   3'- -CAUCCAGUGGuCG----CGgCGGG----CGC-AGg -5'
8966 3' -61 NC_002512.2 + 216256 0.71 0.498727
Target:  5'- ---cGUCAUCAgguGCGCCGCCCGCaccgCCa -3'
miRNA:   3'- caucCAGUGGU---CGCGGCGGGCGca--GG- -5'
8966 3' -61 NC_002512.2 + 216153 0.67 0.724421
Target:  5'- -----aCACCGGCGUCGCgccccucaggcucCCGCGUCUc -3'
miRNA:   3'- cauccaGUGGUCGCGGCG-------------GGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 215594 0.71 0.489726
Target:  5'- cGUGGGagGaCAGCGUCGUCCGgGUCUg -3'
miRNA:   3'- -CAUCCagUgGUCGCGGCGGGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 215065 0.66 0.788042
Target:  5'- ---cGUCGgCGGCGUCuaCCGCGUCg -3'
miRNA:   3'- caucCAGUgGUCGCGGcgGGCGCAGg -5'
8966 3' -61 NC_002512.2 + 214778 0.66 0.788042
Target:  5'- --cGG-CGCCGGuCGCCcUCCGgGUCCc -3'
miRNA:   3'- cauCCaGUGGUC-GCGGcGGGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 214234 0.71 0.526152
Target:  5'- aGgcGGcUCGUCGGCucGCCGCCCGCGgCCg -3'
miRNA:   3'- -CauCC-AGUGGUCG--CGGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 213679 0.79 0.192093
Target:  5'- -aGGGgagC-CCGGCGUCGCCCGCgGUCCu -3'
miRNA:   3'- caUCCa--GuGGUCGCGGCGGGCG-CAGG- -5'
8966 3' -61 NC_002512.2 + 212841 0.74 0.365423
Target:  5'- uUGGG-CGCgGGCGCCGUCCguccccuccgaGCGUCCc -3'
miRNA:   3'- cAUCCaGUGgUCGCGGCGGG-----------CGCAGG- -5'
8966 3' -61 NC_002512.2 + 211893 0.71 0.526152
Target:  5'- -cGGGUCACCuuccGGgGCUG-CCGCGUCg -3'
miRNA:   3'- caUCCAGUGG----UCgCGGCgGGCGCAGg -5'
8966 3' -61 NC_002512.2 + 209199 0.69 0.620794
Target:  5'- -gAGGagACCgAGCGgCGCCUGCGgCCc -3'
miRNA:   3'- caUCCagUGG-UCGCgGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 208800 0.71 0.535421
Target:  5'- cGgcGGUCGCCccggAGCgggaccGCCGCCCGUGcgCCc -3'
miRNA:   3'- -CauCCAGUGG----UCG------CGGCGGGCGCa-GG- -5'
8966 3' -61 NC_002512.2 + 207153 0.66 0.796563
Target:  5'- ----aUCGUCAGCaGCCGCCCGCGguagCUg -3'
miRNA:   3'- cauccAGUGGUCG-CGGCGGGCGCa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.