miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 6318 0.67 0.725348
Target:  5'- -gAGGUgGCC---GCCGCCCGCGgggggaCCg -3'
miRNA:   3'- caUCCAgUGGucgCGGCGGGCGCa-----GG- -5'
8966 3' -61 NC_002512.2 + 7975 0.67 0.743728
Target:  5'- -cAGGcCAUCGGCGCuggCGCCCGa-UCCc -3'
miRNA:   3'- caUCCaGUGGUCGCG---GCGGGCgcAGG- -5'
8966 3' -61 NC_002512.2 + 8045 0.66 0.796563
Target:  5'- --cGGUC-CCgaGGCGCC-CCCGCGggucggacgCCg -3'
miRNA:   3'- cauCCAGuGG--UCGCGGcGGGCGCa--------GG- -5'
8966 3' -61 NC_002512.2 + 8129 0.66 0.821316
Target:  5'- --cGGcCGcCCAGCuGCCGUUcgacggCGCGUCCg -3'
miRNA:   3'- cauCCaGU-GGUCG-CGGCGG------GCGCAGG- -5'
8966 3' -61 NC_002512.2 + 8199 0.7 0.544747
Target:  5'- -gAGcGUCGCCGG-GCgggUGUCCGCGUCCc -3'
miRNA:   3'- caUC-CAGUGGUCgCG---GCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 8402 0.68 0.716048
Target:  5'- aUAGGaCGCCgAGCGCCaggaacgcGCaCCGCGgCCg -3'
miRNA:   3'- cAUCCaGUGG-UCGCGG--------CG-GGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 8719 0.68 0.678292
Target:  5'- -gAGGUCggucgGCC-GCGCgCGCCCGCccGUCg -3'
miRNA:   3'- caUCCAG-----UGGuCGCG-GCGGGCG--CAGg -5'
8966 3' -61 NC_002512.2 + 10164 0.67 0.770635
Target:  5'- -gAGG-CACgGGgGCCGCCucuCGCGcCCc -3'
miRNA:   3'- caUCCaGUGgUCgCGGCGG---GCGCaGG- -5'
8966 3' -61 NC_002512.2 + 10461 0.68 0.678292
Target:  5'- -gAGGagGCCGcCGCCGCCCcgggcguggGCGUCg -3'
miRNA:   3'- caUCCagUGGUcGCGGCGGG---------CGCAGg -5'
8966 3' -61 NC_002512.2 + 10953 0.68 0.716048
Target:  5'- -gAGGaCGCCGGCGCC-CUCGgG-CCa -3'
miRNA:   3'- caUCCaGUGGUCGCGGcGGGCgCaGG- -5'
8966 3' -61 NC_002512.2 + 12517 0.67 0.725348
Target:  5'- cGUAcGUgCACCAG-GCCGCCaugcugaacucgUGCGUCCc -3'
miRNA:   3'- -CAUcCA-GUGGUCgCGGCGG------------GCGCAGG- -5'
8966 3' -61 NC_002512.2 + 14569 0.66 0.821316
Target:  5'- -gAGGaaGCCGGUGCCguagucgccgcaGCCCGUcUCCc -3'
miRNA:   3'- caUCCagUGGUCGCGG------------CGGGCGcAGG- -5'
8966 3' -61 NC_002512.2 + 15224 0.71 0.493318
Target:  5'- -cGGGUCGCCgaGGCGCcgggaggagagacugCgaggcgGCCCGCGUCCc -3'
miRNA:   3'- caUCCAGUGG--UCGCG---------------G------CGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 15646 0.66 0.812388
Target:  5'- --cGGcCGCgGGCggcgagccgacgaGCCGCCUGaCGUCCc -3'
miRNA:   3'- cauCCaGUGgUCG-------------CGGCGGGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 17116 0.67 0.743728
Target:  5'- --cGGaCACCAGgGCCgagcgaGCCCGC-UCCc -3'
miRNA:   3'- cauCCaGUGGUCgCGG------CGGGCGcAGG- -5'
8966 3' -61 NC_002512.2 + 17446 0.67 0.729049
Target:  5'- cGgcGGUCgcgGCCGGCcgGCCcgaacucgaccucccGCCCGuCGUCCu -3'
miRNA:   3'- -CauCCAG---UGGUCG--CGG---------------CGGGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 20531 0.66 0.788042
Target:  5'- --cGGUCGCCAGguCGCCGaCCuCGUaCCa -3'
miRNA:   3'- cauCCAGUGGUC--GCGGCgGGcGCA-GG- -5'
8966 3' -61 NC_002512.2 + 20684 0.71 0.534491
Target:  5'- -cGGGcCGCaGGCGCCGCUCGgucuccuCGUCCa -3'
miRNA:   3'- caUCCaGUGgUCGCGGCGGGC-------GCAGG- -5'
8966 3' -61 NC_002512.2 + 25179 0.67 0.752793
Target:  5'- -cGGGccCGCCGuCGCCGacgUCGCGUCCg -3'
miRNA:   3'- caUCCa-GUGGUcGCGGCg--GGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 25639 0.67 0.770635
Target:  5'- -gAGGUUAUCGGCGgCGCUgcgaGCGUUg -3'
miRNA:   3'- caUCCAGUGGUCGCgGCGGg---CGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.