miRNA display CGI


Results 41 - 60 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 26736 0.67 0.761764
Target:  5'- ---cGUCGCCGGCGCCGCUguaCG-CCa -3'
miRNA:   3'- caucCAGUGGUCGCGGCGGgc-GCaGG- -5'
8966 3' -61 NC_002512.2 + 27414 0.68 0.668751
Target:  5'- -cAGaUCGCCGcCGUCGCCgaGCGUCCg -3'
miRNA:   3'- caUCcAGUGGUcGCGGCGGg-CGCAGG- -5'
8966 3' -61 NC_002512.2 + 27805 0.67 0.724421
Target:  5'- -gAGGUgACCGGCGCCccguaccGCaaGCGggCCa -3'
miRNA:   3'- caUCCAgUGGUCGCGG-------CGggCGCa-GG- -5'
8966 3' -61 NC_002512.2 + 28097 0.72 0.471957
Target:  5'- -gAGGUCGCC-GCcCCGUCCGCGcUCUc -3'
miRNA:   3'- caUCCAGUGGuCGcGGCGGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 29028 0.67 0.759083
Target:  5'- --uGGUCgacGCCAugcggcagagacGCGCCGCgcccccgcugaccuUCGCGUCCa -3'
miRNA:   3'- cauCCAG---UGGU------------CGCGGCG--------------GGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 30276 0.7 0.590147
Target:  5'- --cGGa-GCCGGCGCCauggaggaggccCCCGCGUCCg -3'
miRNA:   3'- cauCCagUGGUCGCGGc-----------GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 31722 0.73 0.412524
Target:  5'- -gAGGUCcgccgGCCGGCGCCGaCCCG-GcCCg -3'
miRNA:   3'- caUCCAG-----UGGUCGCGGC-GGGCgCaGG- -5'
8966 3' -61 NC_002512.2 + 32083 0.69 0.649598
Target:  5'- -gGGGUCGCCGaugGCgGCCCggGUGUCCu -3'
miRNA:   3'- caUCCAGUGGUcg-CGgCGGG--CGCAGG- -5'
8966 3' -61 NC_002512.2 + 33092 0.77 0.236473
Target:  5'- --cGGUCAUCGGgaccauaucuCGCUGUCCGCGUCCg -3'
miRNA:   3'- cauCCAGUGGUC----------GCGGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 33473 0.66 0.821316
Target:  5'- -----aC-CCGGcCGCCGCCCcccGCGUCCc -3'
miRNA:   3'- cauccaGuGGUC-GCGGCGGG---CGCAGG- -5'
8966 3' -61 NC_002512.2 + 34550 0.71 0.5078
Target:  5'- -cGGGUC-CUAGCuUCGUCCGCGUCa -3'
miRNA:   3'- caUCCAGuGGUCGcGGCGGGCGCAGg -5'
8966 3' -61 NC_002512.2 + 35165 0.69 0.659184
Target:  5'- --cGG-CACCAgccGCGCCccccUCCGCGUCCu -3'
miRNA:   3'- cauCCaGUGGU---CGCGGc---GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 36880 0.7 0.544747
Target:  5'- -cAGGUgGgCAGgGCggCGCCCGCgGUCCa -3'
miRNA:   3'- caUCCAgUgGUCgCG--GCGGGCG-CAGG- -5'
8966 3' -61 NC_002512.2 + 37955 0.7 0.582521
Target:  5'- uGUAGGcCACCgucAGCGCCGUCacgaucauagCGCGcUCCc -3'
miRNA:   3'- -CAUCCaGUGG---UCGCGGCGG----------GCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 38404 0.71 0.5078
Target:  5'- --cGGUCGCC-GCGCUGUCCgGCG-CCu -3'
miRNA:   3'- cauCCAGUGGuCGCGGCGGG-CGCaGG- -5'
8966 3' -61 NC_002512.2 + 38567 0.7 0.544747
Target:  5'- --cGG-CACCcGCGucCCGaCCCGCGUCCc -3'
miRNA:   3'- cauCCaGUGGuCGC--GGC-GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 38847 0.66 0.782869
Target:  5'- --cGGUcCACguGCGCCGCgccCCGCcucgcaggcaccucgGUCCg -3'
miRNA:   3'- cauCCA-GUGguCGCGGCG---GGCG---------------CAGG- -5'
8966 3' -61 NC_002512.2 + 38941 0.7 0.573017
Target:  5'- -cGGG-CGCCcGCGUgCGCCCGgGUCUg -3'
miRNA:   3'- caUCCaGUGGuCGCG-GCGGGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 40225 0.7 0.592056
Target:  5'- aGUAGGgccgaCGCCGGUGUCGgC-GCGUCCc -3'
miRNA:   3'- -CAUCCa----GUGGUCGCGGCgGgCGCAGG- -5'
8966 3' -61 NC_002512.2 + 40275 0.66 0.821316
Target:  5'- ----aUCGCguGCgGCCGCCCGCGcacgaacgucgUCCc -3'
miRNA:   3'- cauccAGUGguCG-CGGCGGGCGC-----------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.