miRNA display CGI


Results 41 - 60 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 152071 0.73 0.404417
Target:  5'- --cGGUCAUCGcCGUccuagCGCCCGCGUCCc -3'
miRNA:   3'- cauCCAGUGGUcGCG-----GCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 104258 0.73 0.411709
Target:  5'- aUGGGUCguguguggucgccGCCGGCGUCuuuCUCGCGUCCg -3'
miRNA:   3'- cAUCCAG-------------UGGUCGCGGc--GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 31722 0.73 0.412524
Target:  5'- -gAGGUCcgccgGCCGGCGCCGaCCCG-GcCCg -3'
miRNA:   3'- caUCCAG-----UGGUCGCGGC-GGGCgCaGG- -5'
8966 3' -61 NC_002512.2 + 175625 0.73 0.420732
Target:  5'- -aGGGUCGCCGacGcCGCCGCCCuGCG-CUg -3'
miRNA:   3'- caUCCAGUGGU--C-GCGGCGGG-CGCaGG- -5'
8966 3' -61 NC_002512.2 + 145335 0.73 0.420732
Target:  5'- -gAGGUCgagcGCCucgccGCGCCGCCCGaCG-CCg -3'
miRNA:   3'- caUCCAG----UGGu----CGCGGCGGGC-GCaGG- -5'
8966 3' -61 NC_002512.2 + 188644 0.73 0.428203
Target:  5'- -aAGGgCGCCGGCggcggcgGCgGCCCGuCGUCCg -3'
miRNA:   3'- caUCCaGUGGUCG-------CGgCGGGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 4076 0.73 0.429038
Target:  5'- -gAGGUC-CCAGgccacccgGCCGCCCGCGgCCc -3'
miRNA:   3'- caUCCAGuGGUCg-------CGGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 135743 0.73 0.429038
Target:  5'- -aGGGUCugCcucCGCCGCgucauCCGCGUCCu -3'
miRNA:   3'- caUCCAGugGuc-GCGGCG-----GGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 226819 0.73 0.429038
Target:  5'- --uGGcCGCCGcCGCCG-CCGCGUCCg -3'
miRNA:   3'- cauCCaGUGGUcGCGGCgGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 131784 0.72 0.43744
Target:  5'- -gAGGUCGuCCcGCGCCGUCCcCGUCa -3'
miRNA:   3'- caUCCAGU-GGuCGCGGCGGGcGCAGg -5'
8966 3' -61 NC_002512.2 + 227087 0.72 0.445935
Target:  5'- -cGGGUCccGCCGGcCGCCGgCCGgGUCg -3'
miRNA:   3'- caUCCAG--UGGUC-GCGGCgGGCgCAGg -5'
8966 3' -61 NC_002512.2 + 194753 0.72 0.445935
Target:  5'- cGUGGG-CGCCAGUcggGaCCugGUCCGCGUCCa -3'
miRNA:   3'- -CAUCCaGUGGUCG---C-GG--CGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 157811 0.72 0.445935
Target:  5'- -cAGGUCGCUgcgGGgGCCGgCCGCGaCCu -3'
miRNA:   3'- caUCCAGUGG---UCgCGGCgGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 45124 0.72 0.454521
Target:  5'- -gGGGUCgacgACCAcGgGCCGCCCGcCGaUCCu -3'
miRNA:   3'- caUCCAG----UGGU-CgCGGCGGGC-GC-AGG- -5'
8966 3' -61 NC_002512.2 + 111113 0.72 0.454521
Target:  5'- cGgcGG-CGgaGGCGCCGCCCGCGgggUCCu -3'
miRNA:   3'- -CauCCaGUggUCGCGGCGGGCGC---AGG- -5'
8966 3' -61 NC_002512.2 + 114254 0.72 0.457981
Target:  5'- -aAGGUCAgcuccaccuccuucuCCAGCGgguCCG-CCGCGUCCg -3'
miRNA:   3'- caUCCAGU---------------GGUCGC---GGCgGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 133658 0.72 0.463196
Target:  5'- gGgcGGUCGCCGcCGCCGC-CGCGgCCg -3'
miRNA:   3'- -CauCCAGUGGUcGCGGCGgGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 227363 0.72 0.463196
Target:  5'- -gAGGagGcCCGGgGCCGCCgGCGUCg -3'
miRNA:   3'- caUCCagU-GGUCgCGGCGGgCGCAGg -5'
8966 3' -61 NC_002512.2 + 169078 0.72 0.463196
Target:  5'- --cGG-CGgCGGCGUCgcgGCCCGCGUCCu -3'
miRNA:   3'- cauCCaGUgGUCGCGG---CGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 227658 0.72 0.471957
Target:  5'- -cGGGUCcggaggaagagcGgCGGCGCCGCCgGCGaCCg -3'
miRNA:   3'- caUCCAG------------UgGUCGCGGCGGgCGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.