miRNA display CGI


Results 41 - 60 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 137252 0.76 0.27062
Target:  5'- -cGGGUC-CCGGCGCCGgcggCCGCcGUCCg -3'
miRNA:   3'- caUCCAGuGGUCGCGGCg---GGCG-CAGG- -5'
8966 3' -61 NC_002512.2 + 120026 0.76 0.27062
Target:  5'- gGUAGGUCcCCAcCGCCGCCaCGCcgGUCCc -3'
miRNA:   3'- -CAUCCAGuGGUcGCGGCGG-GCG--CAGG- -5'
8966 3' -61 NC_002512.2 + 60850 0.77 0.253073
Target:  5'- -gAGGagaUGCCGGCGCCGCUCGCGgacgCCg -3'
miRNA:   3'- caUCCa--GUGGUCGCGGCGGGCGCa---GG- -5'
8966 3' -61 NC_002512.2 + 113532 0.78 0.220795
Target:  5'- -cGGGUCACCAG-GCCGCgggCCGCGUUg -3'
miRNA:   3'- caUCCAGUGGUCgCGGCG---GGCGCAGg -5'
8966 3' -61 NC_002512.2 + 69244 0.79 0.196639
Target:  5'- --cGGUCGauCCAGgGUCGUCCGCGUCCc -3'
miRNA:   3'- cauCCAGU--GGUCgCGGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 85327 0.73 0.388506
Target:  5'- cGUAGGUCGCCGGUuggaGCUuCCgCGCGUCg -3'
miRNA:   3'- -CAUCCAGUGGUCG----CGGcGG-GCGCAGg -5'
8966 3' -61 NC_002512.2 + 114805 0.73 0.388506
Target:  5'- -cGGGUgGCCAgGCGCCGCgCGaCGUUCc -3'
miRNA:   3'- caUCCAgUGGU-CGCGGCGgGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 111844 0.72 0.480802
Target:  5'- --uGGUCGuagAGCGCCGCcgucgCCGCGUCCu -3'
miRNA:   3'- cauCCAGUgg-UCGCGGCG-----GGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 28097 0.72 0.471957
Target:  5'- -gAGGUCGCC-GCcCCGUCCGCGcUCUc -3'
miRNA:   3'- caUCCAGUGGuCGcGGCGGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 133658 0.72 0.463196
Target:  5'- gGgcGGUCGCCGcCGCCGC-CGCGgCCg -3'
miRNA:   3'- -CauCCAGUGGUcGCGGCGgGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 114254 0.72 0.457981
Target:  5'- -aAGGUCAgcuccaccuccuucuCCAGCGgguCCG-CCGCGUCCg -3'
miRNA:   3'- caUCCAGU---------------GGUCGC---GGCgGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 45124 0.72 0.454521
Target:  5'- -gGGGUCgacgACCAcGgGCCGCCCGcCGaUCCu -3'
miRNA:   3'- caUCCAG----UGGU-CgCGGCGGGC-GC-AGG- -5'
8966 3' -61 NC_002512.2 + 135743 0.73 0.429038
Target:  5'- -aGGGUCugCcucCGCCGCgucauCCGCGUCCu -3'
miRNA:   3'- caUCCAGugGuc-GCGGCG-----GGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 4076 0.73 0.429038
Target:  5'- -gAGGUC-CCAGgccacccgGCCGCCCGCGgCCc -3'
miRNA:   3'- caUCCAGuGGUCg-------CGGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 31722 0.73 0.412524
Target:  5'- -gAGGUCcgccgGCCGGCGCCGaCCCG-GcCCg -3'
miRNA:   3'- caUCCAG-----UGGUCGCGGC-GGGCgCaGG- -5'
8966 3' -61 NC_002512.2 + 104258 0.73 0.411709
Target:  5'- aUGGGUCguguguggucgccGCCGGCGUCuuuCUCGCGUCCg -3'
miRNA:   3'- cAUCCAG-------------UGGUCGCGGc--GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 41239 0.73 0.404416
Target:  5'- -cGGGcCGCCGcCGCCGCCgGCGcCCu -3'
miRNA:   3'- caUCCaGUGGUcGCGGCGGgCGCaGG- -5'
8966 3' -61 NC_002512.2 + 70955 0.73 0.39641
Target:  5'- -gAGGcCGCCGGCGCC-CCCGCcgaagCCg -3'
miRNA:   3'- caUCCaGUGGUCGCGGcGGGCGca---GG- -5'
8966 3' -61 NC_002512.2 + 99229 0.73 0.391655
Target:  5'- uGUGGGUCGugcgcaucuggugccCCGGCGCCGUcaCCGaGUCCu -3'
miRNA:   3'- -CAUCCAGU---------------GGUCGCGGCG--GGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 137996 0.73 0.388506
Target:  5'- -cGGGccgugCGCCGcGcCGCCGCCCGCG-CCg -3'
miRNA:   3'- caUCCa----GUGGU-C-GCGGCGGGCGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.