miRNA display CGI


Results 41 - 60 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 215065 0.66 0.788042
Target:  5'- ---cGUCGgCGGCGUCuaCCGCGUCg -3'
miRNA:   3'- caucCAGUgGUCGCGGcgGGCGCAGg -5'
8966 3' -61 NC_002512.2 + 219349 0.66 0.821316
Target:  5'- -cAGGUCAUUugauUGCaCGCUCGCGUUCa -3'
miRNA:   3'- caUCCAGUGGuc--GCG-GCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 192881 0.66 0.821316
Target:  5'- -gGGGaCGCauauaAGCGCCGUCgCGC-UCCg -3'
miRNA:   3'- caUCCaGUGg----UCGCGGCGG-GCGcAGG- -5'
8966 3' -61 NC_002512.2 + 171918 0.66 0.812388
Target:  5'- aUAGGuucgucgcccucuUCGCC--CGCCGCgCCGCGcCCg -3'
miRNA:   3'- cAUCC-------------AGUGGucGCGGCG-GGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 82699 0.66 0.796563
Target:  5'- -cGGcGUCcguGCgCGGCGCgGgCCCGCGuUCCg -3'
miRNA:   3'- caUC-CAG---UG-GUCGCGgC-GGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 115552 0.66 0.779396
Target:  5'- ---aGUCGCC--CGCCGCgCGCGUCa -3'
miRNA:   3'- caucCAGUGGucGCGGCGgGCGCAGg -5'
8966 3' -61 NC_002512.2 + 3705 0.66 0.821316
Target:  5'- -gAGGUCGacCCGGuCGCUcCCCGgGUCg -3'
miRNA:   3'- caUCCAGU--GGUC-GCGGcGGGCgCAGg -5'
8966 3' -61 NC_002512.2 + 133930 0.66 0.804954
Target:  5'- uGUAcGG-CGgCGGC-CCgacgGCCCGCGUCCu -3'
miRNA:   3'- -CAU-CCaGUgGUCGcGG----CGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 96437 0.66 0.812388
Target:  5'- --cGGUUuaaauACC-GCGaucgaucCCGUCCGCGUCCg -3'
miRNA:   3'- cauCCAG-----UGGuCGC-------GGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 15646 0.66 0.812388
Target:  5'- --cGGcCGCgGGCggcgagccgacgaGCCGCCUGaCGUCCc -3'
miRNA:   3'- cauCCaGUGgUCG-------------CGGCGGGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 47698 0.66 0.804954
Target:  5'- -gGGGcgguguUCGCCAuccugcGCGCCGCCuCGCGg-- -3'
miRNA:   3'- caUCC------AGUGGU------CGCGGCGG-GCGCagg -5'
8966 3' -61 NC_002512.2 + 121109 0.66 0.796563
Target:  5'- cGUAGaGUUcggugacgACCAGCcggaUCGCCCGCG-CCg -3'
miRNA:   3'- -CAUC-CAG--------UGGUCGc---GGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 121416 0.66 0.802451
Target:  5'- ---cGUCAcguucagcgcgaacCCGGCGCCGCCCGgGg-- -3'
miRNA:   3'- caucCAGU--------------GGUCGCGGCGGGCgCagg -5'
8966 3' -61 NC_002512.2 + 134694 0.66 0.804954
Target:  5'- -cGGGcgcUCGCCGG-GCUGCCCGaCaUCCu -3'
miRNA:   3'- caUCC---AGUGGUCgCGGCGGGC-GcAGG- -5'
8966 3' -61 NC_002512.2 + 8129 0.66 0.821316
Target:  5'- --cGGcCGcCCAGCuGCCGUUcgacggCGCGUCCg -3'
miRNA:   3'- cauCCaGU-GGUCG-CGGCGG------GCGCAGG- -5'
8966 3' -61 NC_002512.2 + 20531 0.66 0.788042
Target:  5'- --cGGUCGCCAGguCGCCGaCCuCGUaCCa -3'
miRNA:   3'- cauCCAGUGGUC--GCGGCgGGcGCA-GG- -5'
8966 3' -61 NC_002512.2 + 5519 0.66 0.794869
Target:  5'- -gAGGUC-CCGGaccgaggucucCCGCCCGCGaCCc -3'
miRNA:   3'- caUCCAGuGGUCgc---------GGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 97883 0.66 0.795717
Target:  5'- -gAGGUCcccCCGGCGCCcggggcgGCCCacGCGaCCu -3'
miRNA:   3'- caUCCAGu--GGUCGCGG-------CGGG--CGCaGG- -5'
8966 3' -61 NC_002512.2 + 104947 0.66 0.788042
Target:  5'- -cGGcGUCgGCgCGGCGCCgGCCuCGUGUCUc -3'
miRNA:   3'- caUC-CAG-UG-GUCGCGG-CGG-GCGCAGG- -5'
8966 3' -61 NC_002512.2 + 33473 0.66 0.821316
Target:  5'- -----aC-CCGGcCGCCGCCCcccGCGUCCc -3'
miRNA:   3'- cauccaGuGGUC-GCGGCGGG---CGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.