miRNA display CGI


Results 41 - 60 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 185331 0.66 0.796563
Target:  5'- ---cGUCugCGuCGCCGCCCGgGUggCCg -3'
miRNA:   3'- caucCAGugGUcGCGGCGGGCgCA--GG- -5'
8966 3' -61 NC_002512.2 + 8045 0.66 0.796563
Target:  5'- --cGGUC-CCgaGGCGCC-CCCGCGggucggacgCCg -3'
miRNA:   3'- cauCCAGuGG--UCGCGGcGGGCGCa--------GG- -5'
8966 3' -61 NC_002512.2 + 121109 0.66 0.796563
Target:  5'- cGUAGaGUUcggugacgACCAGCcggaUCGCCCGCG-CCg -3'
miRNA:   3'- -CAUC-CAG--------UGGUCGc---GGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 199896 0.66 0.796563
Target:  5'- --uGGUCuCgAGa-CCGCCCGUGUCUg -3'
miRNA:   3'- cauCCAGuGgUCgcGGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 97883 0.66 0.795717
Target:  5'- -gAGGUCcccCCGGCGCCcggggcgGCCCacGCGaCCu -3'
miRNA:   3'- caUCCAGu--GGUCGCGG-------CGGG--CGCaGG- -5'
8966 3' -61 NC_002512.2 + 5519 0.66 0.794869
Target:  5'- -gAGGUC-CCGGaccgaggucucCCGCCCGCGaCCc -3'
miRNA:   3'- caUCCAGuGGUCgc---------GGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 104947 0.66 0.788042
Target:  5'- -cGGcGUCgGCgCGGCGCCgGCCuCGUGUCUc -3'
miRNA:   3'- caUC-CAG-UG-GUCGCGG-CGG-GCGCAGG- -5'
8966 3' -61 NC_002512.2 + 214778 0.66 0.788042
Target:  5'- --cGG-CGCCGGuCGCCcUCCGgGUCCc -3'
miRNA:   3'- cauCCaGUGGUC-GCGGcGGGCgCAGG- -5'
8966 3' -61 NC_002512.2 + 143020 0.66 0.788042
Target:  5'- ----uUCcCCAGCGCCcucagcugcGCCCGCG-CCa -3'
miRNA:   3'- cauccAGuGGUCGCGG---------CGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 118632 0.66 0.788042
Target:  5'- -aAGcUCGuCCGcGUGCCGCCCGaCGcUCCg -3'
miRNA:   3'- caUCcAGU-GGU-CGCGGCGGGC-GC-AGG- -5'
8966 3' -61 NC_002512.2 + 112796 0.66 0.788042
Target:  5'- -cGGGU--CCAGgGCgGCCCGCaccUCCa -3'
miRNA:   3'- caUCCAguGGUCgCGgCGGGCGc--AGG- -5'
8966 3' -61 NC_002512.2 + 138959 0.66 0.788042
Target:  5'- cGgcGGccgCGCCGGCcCCGUUCGCGgCCg -3'
miRNA:   3'- -CauCCa--GUGGUCGcGGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 215065 0.66 0.788042
Target:  5'- ---cGUCGgCGGCGUCuaCCGCGUCg -3'
miRNA:   3'- caucCAGUgGUCGCGGcgGGCGCAGg -5'
8966 3' -61 NC_002512.2 + 117801 0.66 0.788042
Target:  5'- cGUGGGUcCGCCAGgcgacgggcuCGCgGCggaCCGaCGUCCu -3'
miRNA:   3'- -CAUCCA-GUGGUC----------GCGgCG---GGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 204666 0.66 0.788042
Target:  5'- -gGGGaUCGCCGGCgGCuCGCucCCGC-UCCg -3'
miRNA:   3'- caUCC-AGUGGUCG-CG-GCG--GGCGcAGG- -5'
8966 3' -61 NC_002512.2 + 20531 0.66 0.788042
Target:  5'- --cGGUCGCCAGguCGCCGaCCuCGUaCCa -3'
miRNA:   3'- cauCCAGUGGUC--GCGGCgGGcGCA-GG- -5'
8966 3' -61 NC_002512.2 + 107610 0.66 0.788042
Target:  5'- -cAGGagcagCACCAGCgagucgggcgGCUGCCCGUGgUUCg -3'
miRNA:   3'- caUCCa----GUGGUCG----------CGGCGGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 75139 0.66 0.787183
Target:  5'- --uGGUCACCgccaccgGGgGCgGauuCCCGUGUCCg -3'
miRNA:   3'- cauCCAGUGG-------UCgCGgC---GGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 149011 0.66 0.787183
Target:  5'- -gGGGcCGCC-GCGgaCCGCCCgacaccgagccccGCGUCCc -3'
miRNA:   3'- caUCCaGUGGuCGC--GGCGGG-------------CGCAGG- -5'
8966 3' -61 NC_002512.2 + 83768 0.66 0.782869
Target:  5'- -cAGGUgCAgaagaCGGCGCCGCcgccgccgccgaggaCCGCGUCg -3'
miRNA:   3'- caUCCA-GUg----GUCGCGGCG---------------GGCGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.