miRNA display CGI


Results 21 - 40 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8966 3' -61 NC_002512.2 + 96437 0.66 0.812388
Target:  5'- --cGGUUuaaauACC-GCGaucgaucCCGUCCGCGUCCg -3'
miRNA:   3'- cauCCAG-----UGGuCGC-------GGCGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 15646 0.66 0.812388
Target:  5'- --cGGcCGCgGGCggcgagccgacgaGCCGCCUGaCGUCCc -3'
miRNA:   3'- cauCCaGUGgUCG-------------CGGCGGGC-GCAGG- -5'
8966 3' -61 NC_002512.2 + 171918 0.66 0.812388
Target:  5'- aUAGGuucgucgcccucuUCGCC--CGCCGCgCCGCGcCCg -3'
miRNA:   3'- cAUCC-------------AGUGGucGCGGCG-GGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 96000 0.66 0.808272
Target:  5'- -cGGGacCGCCGGCcgagccgcuccucgaGCCGCCCcaggaCGUCCu -3'
miRNA:   3'- caUCCa-GUGGUCG---------------CGGCGGGc----GCAGG- -5'
8966 3' -61 NC_002512.2 + 134694 0.66 0.804954
Target:  5'- -cGGGcgcUCGCCGG-GCUGCCCGaCaUCCu -3'
miRNA:   3'- caUCC---AGUGGUCgCGGCGGGC-GcAGG- -5'
8966 3' -61 NC_002512.2 + 133930 0.66 0.804954
Target:  5'- uGUAcGG-CGgCGGC-CCgacgGCCCGCGUCCu -3'
miRNA:   3'- -CAU-CCaGUgGUCGcGG----CGGGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 218593 0.66 0.804954
Target:  5'- -gAGGUCuccCCGGgGUcuCGCCCGCGg-- -3'
miRNA:   3'- caUCCAGu--GGUCgCG--GCGGGCGCagg -5'
8966 3' -61 NC_002512.2 + 47698 0.66 0.804954
Target:  5'- -gGGGcgguguUCGCCAuccugcGCGCCGCCuCGCGg-- -3'
miRNA:   3'- caUCC------AGUGGU------CGCGGCGG-GCGCagg -5'
8966 3' -61 NC_002512.2 + 184677 0.66 0.804954
Target:  5'- --cGGUCGgCGGcCGuCCGCgCCGCcgGUCCc -3'
miRNA:   3'- cauCCAGUgGUC-GC-GGCG-GGCG--CAGG- -5'
8966 3' -61 NC_002512.2 + 190206 0.66 0.804954
Target:  5'- -aAGGUCGgCGGCGCgguCGUCCGgGacggCCa -3'
miRNA:   3'- caUCCAGUgGUCGCG---GCGGGCgCa---GG- -5'
8966 3' -61 NC_002512.2 + 120874 0.66 0.804954
Target:  5'- -cGGGUC-CgCAGgacgaCGCCGCCgGCG-CCg -3'
miRNA:   3'- caUCCAGuG-GUC-----GCGGCGGgCGCaGG- -5'
8966 3' -61 NC_002512.2 + 107201 0.66 0.804954
Target:  5'- -cGGG-CACCAGCcggGCCGCggccggggagCCGCGgucaCCg -3'
miRNA:   3'- caUCCaGUGGUCG---CGGCG----------GGCGCa---GG- -5'
8966 3' -61 NC_002512.2 + 101696 0.66 0.804121
Target:  5'- --cGGUCccGCCGGCGgcCCGCUCGgcgaccuCGUCCc -3'
miRNA:   3'- cauCCAG--UGGUCGC--GGCGGGC-------GCAGG- -5'
8966 3' -61 NC_002512.2 + 121416 0.66 0.802451
Target:  5'- ---cGUCAcguucagcgcgaacCCGGCGCCGCCCGgGg-- -3'
miRNA:   3'- caucCAGU--------------GGUCGCGGCGGGCgCagg -5'
8966 3' -61 NC_002512.2 + 220504 0.66 0.796563
Target:  5'- -gAGGcCgugGCCuGCGUCGCCCGgGaCCu -3'
miRNA:   3'- caUCCaG---UGGuCGCGGCGGGCgCaGG- -5'
8966 3' -61 NC_002512.2 + 121109 0.66 0.796563
Target:  5'- cGUAGaGUUcggugacgACCAGCcggaUCGCCCGCG-CCg -3'
miRNA:   3'- -CAUC-CAG--------UGGUCGc---GGCGGGCGCaGG- -5'
8966 3' -61 NC_002512.2 + 44682 0.66 0.796563
Target:  5'- -cGGGcCACCgcGGCGUCGaccgccgCCGCGUUCu -3'
miRNA:   3'- caUCCaGUGG--UCGCGGCg------GGCGCAGG- -5'
8966 3' -61 NC_002512.2 + 185331 0.66 0.796563
Target:  5'- ---cGUCugCGuCGCCGCCCGgGUggCCg -3'
miRNA:   3'- caucCAGugGUcGCGGCGGGCgCA--GG- -5'
8966 3' -61 NC_002512.2 + 82699 0.66 0.796563
Target:  5'- -cGGcGUCcguGCgCGGCGCgGgCCCGCGuUCCg -3'
miRNA:   3'- caUC-CAG---UG-GUCGCGgC-GGGCGC-AGG- -5'
8966 3' -61 NC_002512.2 + 8045 0.66 0.796563
Target:  5'- --cGGUC-CCgaGGCGCC-CCCGCGggucggacgCCg -3'
miRNA:   3'- cauCCAGuGG--UCGCGGcGGGCGCa--------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.