miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8971 5' -56.4 NC_002512.2 + 180303 0.66 0.95841
Target:  5'- cCCUCGacagGCGCaGCggcgUCGUCAGgUCc -3'
miRNA:   3'- -GGAGCga--CGUGgCGa---AGCAGUCgAGc -5'
8971 5' -56.4 NC_002512.2 + 186391 0.66 0.95841
Target:  5'- aCCgacCGCUGCAgcuCCGCgUCcUCGGCUUc -3'
miRNA:   3'- -GGa--GCGACGU---GGCGaAGcAGUCGAGc -5'
8971 5' -56.4 NC_002512.2 + 216254 0.66 0.958054
Target:  5'- -gUCGUcaucaggUGCGCCGCccgcacCGcCAGCUCGg -3'
miRNA:   3'- ggAGCG-------ACGUGGCGaa----GCaGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 78680 0.66 0.954756
Target:  5'- gCUCGgaGCcuaaguCCGCUUCGgacuuaGGCUCc -3'
miRNA:   3'- gGAGCgaCGu-----GGCGAAGCag----UCGAGc -5'
8971 5' -56.4 NC_002512.2 + 112179 0.66 0.954756
Target:  5'- -gUCGCUGCgcacccGCCGCaggugCGccacgCAGCUCGu -3'
miRNA:   3'- ggAGCGACG------UGGCGaa---GCa----GUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 193801 0.66 0.954756
Target:  5'- cCCUgGCccauuggucGCGCCGCUUCGgggUCGGCg-- -3'
miRNA:   3'- -GGAgCGa--------CGUGGCGAAGC---AGUCGagc -5'
8971 5' -56.4 NC_002512.2 + 118275 0.66 0.953618
Target:  5'- gCCUCGCUG-GCCGCccUCGUCcggaggaagauccgGGC-CGa -3'
miRNA:   3'- -GGAGCGACgUGGCGa-AGCAG--------------UCGaGC- -5'
8971 5' -56.4 NC_002512.2 + 186636 0.66 0.95089
Target:  5'- gCUCGCUGC-CCGCgggccacUGggccCAGCUCc -3'
miRNA:   3'- gGAGCGACGuGGCGaa-----GCa---GUCGAGc -5'
8971 5' -56.4 NC_002512.2 + 5983 0.66 0.95089
Target:  5'- cUCUCGCcGCGCCGCUcccgcuccuccUCcUCGGcCUCc -3'
miRNA:   3'- -GGAGCGaCGUGGCGA-----------AGcAGUC-GAGc -5'
8971 5' -56.4 NC_002512.2 + 98269 0.66 0.95089
Target:  5'- uCCUUGCccccGCGCCGCUcguccccgUCGUCcucCUCGu -3'
miRNA:   3'- -GGAGCGa---CGUGGCGA--------AGCAGuc-GAGC- -5'
8971 5' -56.4 NC_002512.2 + 219205 0.66 0.94681
Target:  5'- aCC-CGCUGCACUGC--CGggcCGGcCUCGg -3'
miRNA:   3'- -GGaGCGACGUGGCGaaGCa--GUC-GAGC- -5'
8971 5' -56.4 NC_002512.2 + 174011 0.66 0.94681
Target:  5'- cCUUCGCaGCGCCGCguacaUGUCcGcCUCGa -3'
miRNA:   3'- -GGAGCGaCGUGGCGaa---GCAGuC-GAGC- -5'
8971 5' -56.4 NC_002512.2 + 217587 0.66 0.94681
Target:  5'- uCCg-GCgGCGCCGCcucgggggUCGUCGGCgacUCGg -3'
miRNA:   3'- -GGagCGaCGUGGCGa-------AGCAGUCG---AGC- -5'
8971 5' -56.4 NC_002512.2 + 199577 0.66 0.942512
Target:  5'- aCUCGUgcgGUACCGCgggUCGUCGacGCg-- -3'
miRNA:   3'- gGAGCGa--CGUGGCGa--AGCAGU--CGagc -5'
8971 5' -56.4 NC_002512.2 + 142181 0.67 0.937994
Target:  5'- gUCUCGCgGCgucuccgcgucGCCGCgcguccCGUCGGuCUCGa -3'
miRNA:   3'- -GGAGCGaCG-----------UGGCGaa----GCAGUC-GAGC- -5'
8971 5' -56.4 NC_002512.2 + 171938 0.67 0.937994
Target:  5'- gCC-CGCcGCGCCGCgccCGUCuaucucccGCUCGc -3'
miRNA:   3'- -GGaGCGaCGUGGCGaa-GCAGu-------CGAGC- -5'
8971 5' -56.4 NC_002512.2 + 223627 0.67 0.937994
Target:  5'- -gUCGCUgGUGCUGCUcggcgggcUCGUCAuGCUCu -3'
miRNA:   3'- ggAGCGA-CGUGGCGA--------AGCAGU-CGAGc -5'
8971 5' -56.4 NC_002512.2 + 24913 0.67 0.933256
Target:  5'- cCC-CGUcGC-CCGCggCGUCgGGCUCGg -3'
miRNA:   3'- -GGaGCGaCGuGGCGaaGCAG-UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 15549 0.67 0.933256
Target:  5'- cUCUCGCUGaggagGCCGgagUCGUCGgccuGCUCGu -3'
miRNA:   3'- -GGAGCGACg----UGGCga-AGCAGU----CGAGC- -5'
8971 5' -56.4 NC_002512.2 + 209559 0.67 0.933256
Target:  5'- gUCUCGgaGCGCgGUcUCGaCGGCUCc -3'
miRNA:   3'- -GGAGCgaCGUGgCGaAGCaGUCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.