miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8974 5' -55.4 NC_002512.2 + 169434 0.66 0.968941
Target:  5'- gUCgcgCGGAUGUUGGcGGcgcaCACCGGGUc -3'
miRNA:   3'- aAGaa-GCCUGCAGCU-CCa---GUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 169053 0.68 0.92385
Target:  5'- aUCUccUCGGGCG-CGAGGggcuCCGcGGCg -3'
miRNA:   3'- aAGA--AGCCUGCaGCUCCagu-GGU-CCG- -5'
8974 5' -55.4 NC_002512.2 + 166030 0.66 0.962682
Target:  5'- gUUCggCGGcCGUucCGGGGUCAUCAaGGUc -3'
miRNA:   3'- -AAGaaGCCuGCA--GCUCCAGUGGU-CCG- -5'
8974 5' -55.4 NC_002512.2 + 165570 0.67 0.943337
Target:  5'- ---gUCGG-CGaCGuGGUgGCCGGGCa -3'
miRNA:   3'- aagaAGCCuGCaGCuCCAgUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 164201 0.66 0.971773
Target:  5'- -aCUUCaugcaGGGCcUCGGGGcCGCCGGGa -3'
miRNA:   3'- aaGAAG-----CCUGcAGCUCCaGUGGUCCg -5'
8974 5' -55.4 NC_002512.2 + 163290 0.66 0.968647
Target:  5'- ----aUGGcaACGUCGAGGUCuACCAgaccagcGGCg -3'
miRNA:   3'- aagaaGCC--UGCAGCUCCAG-UGGU-------CCG- -5'
8974 5' -55.4 NC_002512.2 + 160333 0.69 0.89439
Target:  5'- aUCgugCGGcACGUCGGGGUgACgaugAGGCa -3'
miRNA:   3'- aAGaa-GCC-UGCAGCUCCAgUGg---UCCG- -5'
8974 5' -55.4 NC_002512.2 + 159357 0.7 0.859492
Target:  5'- ---aUCGG-CGUCGGGGUCG--GGGCg -3'
miRNA:   3'- aagaAGCCuGCAGCUCCAGUggUCCG- -5'
8974 5' -55.4 NC_002512.2 + 158647 0.66 0.968941
Target:  5'- -cCUUCGaccccGACGUCGAGGccacggucaUCGCCGGa- -3'
miRNA:   3'- aaGAAGC-----CUGCAGCUCC---------AGUGGUCcg -5'
8974 5' -55.4 NC_002512.2 + 157063 0.7 0.836165
Target:  5'- ----gCGGGCGUcccggggucCGGGGUCGCCGGcGCc -3'
miRNA:   3'- aagaaGCCUGCA---------GCUCCAGUGGUC-CG- -5'
8974 5' -55.4 NC_002512.2 + 154404 0.66 0.962682
Target:  5'- ---gUCGGagGCGaUCGGGGUC-CgAGGCa -3'
miRNA:   3'- aagaAGCC--UGC-AGCUCCAGuGgUCCG- -5'
8974 5' -55.4 NC_002512.2 + 153637 0.66 0.968941
Target:  5'- cUUCggCGGACGggagCGGGGgcacgcuccUCACCcucguGGCg -3'
miRNA:   3'- -AAGaaGCCUGCa---GCUCC---------AGUGGu----CCG- -5'
8974 5' -55.4 NC_002512.2 + 152839 0.72 0.76673
Target:  5'- ---aUCGGGCcUCGcGGUCcCCAGGCg -3'
miRNA:   3'- aagaAGCCUGcAGCuCCAGuGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 146828 0.76 0.521952
Target:  5'- -cCUUCGcGCG-CGAGGUCGCCuGGCc -3'
miRNA:   3'- aaGAAGCcUGCaGCUCCAGUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 135632 0.72 0.748066
Target:  5'- gUUC-UCGGGgGUCcGGGUCGCC-GGCg -3'
miRNA:   3'- -AAGaAGCCUgCAGcUCCAGUGGuCCG- -5'
8974 5' -55.4 NC_002512.2 + 134304 0.66 0.960644
Target:  5'- gUCUUCgaGGACGUCGccgGGGccggcgccgacggacUCGCCGcGGCc -3'
miRNA:   3'- aAGAAG--CCUGCAGC---UCC---------------AGUGGU-CCG- -5'
8974 5' -55.4 NC_002512.2 + 131017 0.71 0.79385
Target:  5'- gUCUUCgacgcgcucgaGGGCGUCGGGGcCGCgGGGg -3'
miRNA:   3'- aAGAAG-----------CCUGCAGCUCCaGUGgUCCg -5'
8974 5' -55.4 NC_002512.2 + 130851 0.66 0.955594
Target:  5'- -cCggCGGuCGggCGAGGccccCACCGGGCg -3'
miRNA:   3'- aaGaaGCCuGCa-GCUCCa---GUGGUCCG- -5'
8974 5' -55.4 NC_002512.2 + 128413 0.72 0.76673
Target:  5'- ----cCGGugG-CGGGGUCGCCGGaGCc -3'
miRNA:   3'- aagaaGCCugCaGCUCCAGUGGUC-CG- -5'
8974 5' -55.4 NC_002512.2 + 126904 0.66 0.955594
Target:  5'- cUUCUcUCGcGGCGg-GGGGagGCCGGGCu -3'
miRNA:   3'- -AAGA-AGC-CUGCagCUCCagUGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.