Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8976 | 3' | -55.2 | NC_002512.2 | + | 167426 | 0.66 | 0.955204 |
Target: 5'- aUCUCGUGCGgcGGCaCGCCUGcgcgUUCGu- -3' miRNA: 3'- aGGAGUACGC--CCG-GCGGAUa---AAGCua -5' |
|||||||
8976 | 3' | -55.2 | NC_002512.2 | + | 214629 | 0.66 | 0.955204 |
Target: 5'- cCCUCGcggggacGCGGGCCGCCUcgcagUCu-- -3' miRNA: 3'- aGGAGUa------CGCCCGGCGGAuaa--AGcua -5' |
|||||||
8976 | 3' | -55.2 | NC_002512.2 | + | 9673 | 0.66 | 0.958924 |
Target: 5'- -aCUCGUccccCGGGCCGCCg---UCGGg -3' miRNA: 3'- agGAGUAc---GCCCGGCGGauaaAGCUa -5' |
|||||||
8976 | 3' | -55.2 | NC_002512.2 | + | 148421 | 0.66 | 0.962427 |
Target: 5'- gCCUCcUGCGGGaCCGCCgggggaGGa -3' miRNA: 3'- aGGAGuACGCCC-GGCGGauaaagCUa -5' |
|||||||
8976 | 3' | -55.2 | NC_002512.2 | + | 42436 | 0.66 | 0.962427 |
Target: 5'- -aCUCAcaCGGGCCGCCUcc-UCGGc -3' miRNA: 3'- agGAGUacGCCCGGCGGAuaaAGCUa -5' |
|||||||
8976 | 3' | -55.2 | NC_002512.2 | + | 129973 | 0.66 | 0.965716 |
Target: 5'- cCCUUcgGCGGGCCcCCggcgcccUCGAc -3' miRNA: 3'- aGGAGuaCGCCCGGcGGauaa---AGCUa -5' |
|||||||
8976 | 3' | -55.2 | NC_002512.2 | + | 80052 | 0.66 | 0.965716 |
Target: 5'- gUCCUCGUcgcGCGGGUCGCucuccgccucgCUGUccUCGAc -3' miRNA: 3'- -AGGAGUA---CGCCCGGCG-----------GAUAa-AGCUa -5' |
|||||||
8976 | 3' | -55.2 | NC_002512.2 | + | 17490 | 0.66 | 0.965716 |
Target: 5'- gUCCUCGU-C-GGCCGCCUcc-UCGAUc -3' miRNA: 3'- -AGGAGUAcGcCCGGCGGAuaaAGCUA- -5' |
|||||||
8976 | 3' | -55.2 | NC_002512.2 | + | 218217 | 0.66 | 0.965716 |
Target: 5'- gCCUCGggccgcgGCGGGCCGCggcgc-CGAUa -3' miRNA: 3'- aGGAGUa------CGCCCGGCGgauaaaGCUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home