Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8976 | 5' | -54.7 | NC_002512.2 | + | 197647 | 1.1 | 0.005292 |
Target: 5'- aUCACCGACAAACUCUGGCCCGACGAGg -3' miRNA: 3'- -AGUGGCUGUUUGAGACCGGGCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 101973 | 0.78 | 0.486098 |
Target: 5'- cCGCCGGCGGGCUCgUGGCCgaucCGACGGu -3' miRNA: 3'- aGUGGCUGUUUGAG-ACCGG----GCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 120984 | 0.76 | 0.562728 |
Target: 5'- gCACCGGCGAACg--GGcCCCGACGGc -3' miRNA: 3'- aGUGGCUGUUUGagaCC-GGGCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 190028 | 0.74 | 0.711467 |
Target: 5'- -gGCCGACAugaucCUCUGcUCCGACGAGg -3' miRNA: 3'- agUGGCUGUuu---GAGACcGGGCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 218853 | 0.74 | 0.68201 |
Target: 5'- uUCGCCGACGAGgUCgcccggGGCaCCGACGc- -3' miRNA: 3'- -AGUGGCUGUUUgAGa-----CCG-GGCUGCuc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 27968 | 0.73 | 0.740346 |
Target: 5'- gUCGCCGAUggGC---GGCCgGGCGAGa -3' miRNA: 3'- -AGUGGCUGuuUGagaCCGGgCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 187990 | 0.73 | 0.740346 |
Target: 5'- aUCGCCGAUgcaucgAGACUgUGGCCgGAgCGGGg -3' miRNA: 3'- -AGUGGCUG------UUUGAgACCGGgCU-GCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 114187 | 0.72 | 0.777554 |
Target: 5'- gCGCCGGCG---UCgGGCCCGGCGGc -3' miRNA: 3'- aGUGGCUGUuugAGaCCGGGCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 129898 | 0.72 | 0.807643 |
Target: 5'- cUCGCCGACGAuccGCUCUcccgucuccucggggGGCuguCCGACGAa -3' miRNA: 3'- -AGUGGCUGUU---UGAGA---------------CCG---GGCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 22162 | 0.72 | 0.795448 |
Target: 5'- cCGCCGACGaugGACUC-GGCgCUGGCGAu -3' miRNA: 3'- aGUGGCUGU---UUGAGaCCG-GGCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 42968 | 0.72 | 0.777554 |
Target: 5'- cCACgGGCAgguaGACgcgCUGGuuCCCGACGAGg -3' miRNA: 3'- aGUGgCUGU----UUGa--GACC--GGGCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 94836 | 0.71 | 0.853253 |
Target: 5'- cCGCCGGaggaaGAGCg-UGGCCgCGGCGAGa -3' miRNA: 3'- aGUGGCUg----UUUGagACCGG-GCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 146625 | 0.71 | 0.852487 |
Target: 5'- -uGCCGACGAuccgccaGCUgCUGGCggCGACGAGg -3' miRNA: 3'- agUGGCUGUU-------UGA-GACCGg-GCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 62141 | 0.71 | 0.83759 |
Target: 5'- gUCGCCGACGcccggcAGCUCcucgccccGCUCGACGAGa -3' miRNA: 3'- -AGUGGCUGU------UUGAGac------CGGGCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 151860 | 0.7 | 0.882246 |
Target: 5'- aCACgCGACcggauGACUCgugGGCgCCGGCGAu -3' miRNA: 3'- aGUG-GCUGu----UUGAGa--CCG-GGCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 112478 | 0.7 | 0.895494 |
Target: 5'- gCACCGACuccAGCgugugcgCgcaGCCCGACGAGu -3' miRNA: 3'- aGUGGCUGu--UUGa------Gac-CGGGCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 93176 | 0.7 | 0.895494 |
Target: 5'- aUCACCGACAGGa--UGG-CgGACGAGa -3' miRNA: 3'- -AGUGGCUGUUUgagACCgGgCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 84340 | 0.7 | 0.882246 |
Target: 5'- gUCGCCGcguccucgaGCGGgauGCUCcGGCCCGACGc- -3' miRNA: 3'- -AGUGGC---------UGUU---UGAGaCCGGGCUGCuc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 128215 | 0.7 | 0.868153 |
Target: 5'- cCGCCGACGuagaUC-GGCCCGGCGu- -3' miRNA: 3'- aGUGGCUGUuug-AGaCCGGGCUGCuc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 87765 | 0.7 | 0.868153 |
Target: 5'- -aGCCGAgaGAGCUCcGGCcgCCGACGGGu -3' miRNA: 3'- agUGGCUg-UUUGAGaCCG--GGCUGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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