miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8976 5' -54.7 NC_002512.2 + 138 0.66 0.981573
Target:  5'- aCGCCGGgGAGCcgggCggGGCgCCGGCGGa -3'
miRNA:   3'- aGUGGCUgUUUGa---Ga-CCG-GGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 3195 0.68 0.939573
Target:  5'- aCGCCGccGCGGGCgacGGCCCGGCGc- -3'
miRNA:   3'- aGUGGC--UGUUUGagaCCGGGCUGCuc -5'
8976 5' -54.7 NC_002512.2 + 4412 0.66 0.974817
Target:  5'- aUCGCgguCGACGgcGGCUgCUGGUagaCCGGCGGGg -3'
miRNA:   3'- -AGUG---GCUGU--UUGA-GACCG---GGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 6953 0.66 0.972207
Target:  5'- -gGCCGGCcAGgUCguUGGCCCG-CGGGc -3'
miRNA:   3'- agUGGCUGuUUgAG--ACCGGGCuGCUC- -5'
8976 5' -54.7 NC_002512.2 + 7120 0.69 0.901791
Target:  5'- -aGCCGu---GCUCguUGGCCCaGACGAGg -3'
miRNA:   3'- agUGGCuguuUGAG--ACCGGG-CUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 10570 0.69 0.913718
Target:  5'- aCGCCGACGcuCUCcccgUGGCCgcggaCGACGAa -3'
miRNA:   3'- aGUGGCUGUuuGAG----ACCGG-----GCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 14432 0.68 0.939573
Target:  5'- aCGCCGGCGAugacccGCUCccggGGgCUGACGAu -3'
miRNA:   3'- aGUGGCUGUU------UGAGa---CCgGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 16864 0.7 0.867427
Target:  5'- -aGCCGGCGGACgcacCUcgagagggccccgGGCCCGACGGc -3'
miRNA:   3'- agUGGCUGUUUGa---GA-------------CCGGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 21315 0.66 0.981573
Target:  5'- gCugCGcguCGAGCUC-GGCCUGACGc- -3'
miRNA:   3'- aGugGCu--GUUUGAGaCCGGGCUGCuc -5'
8976 5' -54.7 NC_002512.2 + 22162 0.72 0.795448
Target:  5'- cCGCCGACGaugGACUC-GGCgCUGGCGAu -3'
miRNA:   3'- aGUGGCUGU---UUGAGaCCG-GGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 24857 0.67 0.969408
Target:  5'- gUCGgCGGCGGACgc-GGcCCCGAcCGAGg -3'
miRNA:   3'- -AGUgGCUGUUUGagaCC-GGGCU-GCUC- -5'
8976 5' -54.7 NC_002512.2 + 24917 0.67 0.959816
Target:  5'- gUCGCCcgcGGCGucgGGCUC-GGCCCgcagcGACGAGg -3'
miRNA:   3'- -AGUGG---CUGU---UUGAGaCCGGG-----CUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 26388 0.67 0.956204
Target:  5'- -gGCCGAUGAACUucCUGGUgCUGGCGAc -3'
miRNA:   3'- agUGGCUGUUUGA--GACCG-GGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 27968 0.73 0.740346
Target:  5'- gUCGCCGAUggGC---GGCCgGGCGAGa -3'
miRNA:   3'- -AGUGGCUGuuUGagaCCGGgCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 29737 0.67 0.956204
Target:  5'- cUACCGugGcGGCgcgCgagggGGCCCGGCGAu -3'
miRNA:   3'- aGUGGCugU-UUGa--Ga----CCGGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 31145 0.69 0.913718
Target:  5'- -gGCCGucuucGCGGAC-CUGGCCCGG-GAGa -3'
miRNA:   3'- agUGGC-----UGUUUGaGACCGGGCUgCUC- -5'
8976 5' -54.7 NC_002512.2 + 31732 0.69 0.924743
Target:  5'- -gGCCGGCGccGAC-CcGGCCCGcGCGGGg -3'
miRNA:   3'- agUGGCUGU--UUGaGaCCGGGC-UGCUC- -5'
8976 5' -54.7 NC_002512.2 + 35928 0.66 0.974817
Target:  5'- cCGCCGGCGGcCUCUcGcGCCaGACGAc -3'
miRNA:   3'- aGUGGCUGUUuGAGA-C-CGGgCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 36730 0.69 0.913718
Target:  5'- gCGCCGAucCAGACgCcGGCCagGACGAGg -3'
miRNA:   3'- aGUGGCU--GUUUGaGaCCGGg-CUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 38286 0.69 0.919344
Target:  5'- aCGCCGACGGACUCgaccGCgCGAcCGAa -3'
miRNA:   3'- aGUGGCUGUUUGAGac--CGgGCU-GCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.