miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8976 5' -54.7 NC_002512.2 + 197647 1.1 0.005292
Target:  5'- aUCACCGACAAACUCUGGCCCGACGAGg -3'
miRNA:   3'- -AGUGGCUGUUUGAGACCGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 101973 0.78 0.486098
Target:  5'- cCGCCGGCGGGCUCgUGGCCgaucCGACGGu -3'
miRNA:   3'- aGUGGCUGUUUGAG-ACCGG----GCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 120984 0.76 0.562728
Target:  5'- gCACCGGCGAACg--GGcCCCGACGGc -3'
miRNA:   3'- aGUGGCUGUUUGagaCC-GGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 218853 0.74 0.68201
Target:  5'- uUCGCCGACGAGgUCgcccggGGCaCCGACGc- -3'
miRNA:   3'- -AGUGGCUGUUUgAGa-----CCG-GGCUGCuc -5'
8976 5' -54.7 NC_002512.2 + 190028 0.74 0.711467
Target:  5'- -gGCCGACAugaucCUCUGcUCCGACGAGg -3'
miRNA:   3'- agUGGCUGUuu---GAGACcGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 187990 0.73 0.740346
Target:  5'- aUCGCCGAUgcaucgAGACUgUGGCCgGAgCGGGg -3'
miRNA:   3'- -AGUGGCUG------UUUGAgACCGGgCU-GCUC- -5'
8976 5' -54.7 NC_002512.2 + 27968 0.73 0.740346
Target:  5'- gUCGCCGAUggGC---GGCCgGGCGAGa -3'
miRNA:   3'- -AGUGGCUGuuUGagaCCGGgCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 114187 0.72 0.777554
Target:  5'- gCGCCGGCG---UCgGGCCCGGCGGc -3'
miRNA:   3'- aGUGGCUGUuugAGaCCGGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 42968 0.72 0.777554
Target:  5'- cCACgGGCAgguaGACgcgCUGGuuCCCGACGAGg -3'
miRNA:   3'- aGUGgCUGU----UUGa--GACC--GGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 22162 0.72 0.795448
Target:  5'- cCGCCGACGaugGACUC-GGCgCUGGCGAu -3'
miRNA:   3'- aGUGGCUGU---UUGAGaCCG-GGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 129898 0.72 0.807643
Target:  5'- cUCGCCGACGAuccGCUCUcccgucuccucggggGGCuguCCGACGAa -3'
miRNA:   3'- -AGUGGCUGUU---UGAGA---------------CCG---GGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 62141 0.71 0.83759
Target:  5'- gUCGCCGACGcccggcAGCUCcucgccccGCUCGACGAGa -3'
miRNA:   3'- -AGUGGCUGU------UUGAGac------CGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 146625 0.71 0.852487
Target:  5'- -uGCCGACGAuccgccaGCUgCUGGCggCGACGAGg -3'
miRNA:   3'- agUGGCUGUU-------UGA-GACCGg-GCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 94836 0.71 0.853253
Target:  5'- cCGCCGGaggaaGAGCg-UGGCCgCGGCGAGa -3'
miRNA:   3'- aGUGGCUg----UUUGagACCGG-GCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 16864 0.7 0.867427
Target:  5'- -aGCCGGCGGACgcacCUcgagagggccccgGGCCCGACGGc -3'
miRNA:   3'- agUGGCUGUUUGa---GA-------------CCGGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 134329 0.7 0.868153
Target:  5'- gCGCCGACGGACUC--GCCgCGGcCGAGc -3'
miRNA:   3'- aGUGGCUGUUUGAGacCGG-GCU-GCUC- -5'
8976 5' -54.7 NC_002512.2 + 87765 0.7 0.868153
Target:  5'- -aGCCGAgaGAGCUCcGGCcgCCGACGGGu -3'
miRNA:   3'- agUGGCUg-UUUGAGaCCG--GGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 128215 0.7 0.868153
Target:  5'- cCGCCGACGuagaUC-GGCCCGGCGu- -3'
miRNA:   3'- aGUGGCUGUuug-AGaCCGGGCUGCuc -5'
8976 5' -54.7 NC_002512.2 + 71654 0.7 0.875303
Target:  5'- cCACCGAgcCGAACUUgggcGGCCCGGacagGAGg -3'
miRNA:   3'- aGUGGCU--GUUUGAGa---CCGGGCUg---CUC- -5'
8976 5' -54.7 NC_002512.2 + 84340 0.7 0.882246
Target:  5'- gUCGCCGcguccucgaGCGGgauGCUCcGGCCCGACGc- -3'
miRNA:   3'- -AGUGGC---------UGUU---UGAGaCCGGGCUGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.