Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8976 | 5' | -54.7 | NC_002512.2 | + | 226490 | 0.66 | 0.979493 |
Target: 5'- aCGCCGugGucCUCUGGggaCCUGugGGc -3' miRNA: 3'- aGUGGCugUuuGAGACC---GGGCugCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 35928 | 0.66 | 0.974817 |
Target: 5'- cCGCCGGCGGcCUCUcGcGCCaGACGAc -3' miRNA: 3'- aGUGGCUGUUuGAGA-C-CGGgCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 126217 | 0.66 | 0.974817 |
Target: 5'- cUCugCGACGucgaggcGCUCgUGGCcgCCGAgGAGg -3' miRNA: 3'- -AGugGCUGUu------UGAG-ACCG--GGCUgCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 42048 | 0.66 | 0.979493 |
Target: 5'- cUUGCCGACGAAC--UGGCuCCgGACGGu -3' miRNA: 3'- -AGUGGCUGUUUGagACCG-GG-CUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 4412 | 0.66 | 0.974817 |
Target: 5'- aUCGCgguCGACGgcGGCUgCUGGUagaCCGGCGGGg -3' miRNA: 3'- -AGUG---GCUGU--UUGA-GACCG---GGCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 21315 | 0.66 | 0.981573 |
Target: 5'- gCugCGcguCGAGCUC-GGCCUGACGc- -3' miRNA: 3'- aGugGCu--GUUUGAGaCCGGGCUGCuc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 95721 | 0.66 | 0.979493 |
Target: 5'- aCGCCGcCAGGgUCcGGgUCGACGGGu -3' miRNA: 3'- aGUGGCuGUUUgAGaCCgGGCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 106629 | 0.66 | 0.981573 |
Target: 5'- cCGCCGGgGgguAGCggcgCcGGCUCGGCGAGu -3' miRNA: 3'- aGUGGCUgU---UUGa---GaCCGGGCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 229541 | 0.66 | 0.981573 |
Target: 5'- aCGCCGGgGAGCcgggCggGGCgCCGGCGGa -3' miRNA: 3'- aGUGGCUgUUUGa---Ga-CCG-GGCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 83137 | 0.66 | 0.977243 |
Target: 5'- gUCcCCGucguCGAGgUCgucgGGCCCGGCGGc -3' miRNA: 3'- -AGuGGCu---GUUUgAGa---CCGGGCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 97204 | 0.66 | 0.974817 |
Target: 5'- gUCugCGGC-GGCg--GGCCgGGCGGGa -3' miRNA: 3'- -AGugGCUGuUUGagaCCGGgCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 6953 | 0.66 | 0.972207 |
Target: 5'- -gGCCGGCcAGgUCguUGGCCCG-CGGGc -3' miRNA: 3'- agUGGCUGuUUgAG--ACCGGGCuGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 112871 | 0.66 | 0.979493 |
Target: 5'- -gGCCG-CGucCUCcGGCCCGGCGu- -3' miRNA: 3'- agUGGCuGUuuGAGaCCGGGCUGCuc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 64221 | 0.66 | 0.979493 |
Target: 5'- gUCAUCGAgGAcCUC-GGCCUG-CGGGa -3' miRNA: 3'- -AGUGGCUgUUuGAGaCCGGGCuGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 54096 | 0.66 | 0.972207 |
Target: 5'- aCGCCGcCAAGCUgUcGGCCUG-CGAc -3' miRNA: 3'- aGUGGCuGUUUGAgA-CCGGGCuGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 130939 | 0.66 | 0.981573 |
Target: 5'- aCACCGACuGAGCUCgaGG-CgGACGAc -3' miRNA: 3'- aGUGGCUG-UUUGAGa-CCgGgCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 219212 | 0.66 | 0.981573 |
Target: 5'- gCACUGcCGGGC-C-GGCCuCGGCGAGg -3' miRNA: 3'- aGUGGCuGUUUGaGaCCGG-GCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 123953 | 0.66 | 0.981573 |
Target: 5'- -uGCCGGCGggacccucggGGCUCUGGCguuccguguaCGACGAc -3' miRNA: 3'- agUGGCUGU----------UUGAGACCGg---------GCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 72874 | 0.66 | 0.972207 |
Target: 5'- gUCGCCGuuguCGcggGGCUCgGGCCCGaaGCGGc -3' miRNA: 3'- -AGUGGCu---GU---UUGAGaCCGGGC--UGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 201849 | 0.66 | 0.981573 |
Target: 5'- -gGCCGGC-AGCUCgccuggGGCCUGcggucCGAGg -3' miRNA: 3'- agUGGCUGuUUGAGa-----CCGGGCu----GCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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