Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8976 | 5' | -54.7 | NC_002512.2 | + | 112871 | 0.66 | 0.979493 |
Target: 5'- -gGCCG-CGucCUCcGGCCCGGCGu- -3' miRNA: 3'- agUGGCuGUuuGAGaCCGGGCUGCuc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 189665 | 0.66 | 0.977243 |
Target: 5'- aCACCGGCGucGGCccuaCUGGUaCCGGCGGc -3' miRNA: 3'- aGUGGCUGU--UUGa---GACCG-GGCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 111078 | 0.66 | 0.976534 |
Target: 5'- gUCGCCGAcCAcgacgggggcccacAGCUCccGCCCGGCGGc -3' miRNA: 3'- -AGUGGCU-GU--------------UUGAGacCGGGCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 4412 | 0.66 | 0.974817 |
Target: 5'- aUCGCgguCGACGgcGGCUgCUGGUagaCCGGCGGGg -3' miRNA: 3'- -AGUG---GCUGU--UUGA-GACCG---GGCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 156462 | 0.66 | 0.974817 |
Target: 5'- gCGgCGGgGGACUCgggggcggcgGGCUCGGCGGGc -3' miRNA: 3'- aGUgGCUgUUUGAGa---------CCGGGCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 111174 | 0.66 | 0.977243 |
Target: 5'- gUCGCCGGCGAGC---GGCa-GGCGGGg -3' miRNA: 3'- -AGUGGCUGUUUGagaCCGggCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 6953 | 0.66 | 0.972207 |
Target: 5'- -gGCCGGCcAGgUCguUGGCCCG-CGGGc -3' miRNA: 3'- agUGGCUGuUUgAG--ACCGGGCuGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 72874 | 0.66 | 0.972207 |
Target: 5'- gUCGCCGuuguCGcggGGCUCgGGCCCGaaGCGGc -3' miRNA: 3'- -AGUGGCu---GU---UUGAGaCCGGGC--UGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 97204 | 0.66 | 0.974817 |
Target: 5'- gUCugCGGC-GGCg--GGCCgGGCGGGa -3' miRNA: 3'- -AGugGCUGuUUGagaCCGGgCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 126217 | 0.66 | 0.974817 |
Target: 5'- cUCugCGACGucgaggcGCUCgUGGCcgCCGAgGAGg -3' miRNA: 3'- -AGugGCUGUu------UGAG-ACCG--GGCUgCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 35928 | 0.66 | 0.974817 |
Target: 5'- cCGCCGGCGGcCUCUcGcGCCaGACGAc -3' miRNA: 3'- aGUGGCUGUUuGAGA-C-CGGgCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 83137 | 0.66 | 0.977243 |
Target: 5'- gUCcCCGucguCGAGgUCgucgGGCCCGGCGGc -3' miRNA: 3'- -AGuGGCu---GUUUgAGa---CCGGGCUGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 54096 | 0.66 | 0.972207 |
Target: 5'- aCGCCGcCAAGCUgUcGGCCUG-CGAc -3' miRNA: 3'- aGUGGCuGUUUGAgA-CCGGGCuGCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 95721 | 0.66 | 0.979493 |
Target: 5'- aCGCCGcCAGGgUCcGGgUCGACGGGu -3' miRNA: 3'- aGUGGCuGUUUgAGaCCgGGCUGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 226490 | 0.66 | 0.979493 |
Target: 5'- aCGCCGugGucCUCUGGggaCCUGugGGc -3' miRNA: 3'- aGUGGCugUuuGAGACC---GGGCugCUc -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 109220 | 0.67 | 0.969408 |
Target: 5'- cUCACCGAgAuaucgacccGGCUCUGGuguCCCGGgaaGAGg -3' miRNA: 3'- -AGUGGCUgU---------UUGAGACC---GGGCUg--CUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 80474 | 0.67 | 0.963218 |
Target: 5'- cCGCCG-CGGucccCUCgcGGCCCGuCGAGg -3' miRNA: 3'- aGUGGCuGUUu---GAGa-CCGGGCuGCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 118027 | 0.67 | 0.966413 |
Target: 5'- cCACCGACAAgaccaaggagGCcgUGGCCCGugccCGGGc -3' miRNA: 3'- aGUGGCUGUU----------UGagACCGGGCu---GCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 24857 | 0.67 | 0.969408 |
Target: 5'- gUCGgCGGCGGACgc-GGcCCCGAcCGAGg -3' miRNA: 3'- -AGUgGCUGUUUGagaCC-GGGCU-GCUC- -5' |
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8976 | 5' | -54.7 | NC_002512.2 | + | 121331 | 0.67 | 0.963218 |
Target: 5'- gCACCGGuCGGAa---GGCCCGGCGGa -3' miRNA: 3'- aGUGGCU-GUUUgagaCCGGGCUGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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