miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8976 5' -54.7 NC_002512.2 + 41892 0.67 0.963218
Target:  5'- gCGCCGACAggUccgagCUGuCCUGACGAu -3'
miRNA:   3'- aGUGGCUGUuuGa----GACcGGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 42048 0.66 0.979493
Target:  5'- cUUGCCGACGAAC--UGGCuCCgGACGGu -3'
miRNA:   3'- -AGUGGCUGUUUGagACCG-GG-CUGCUc -5'
8976 5' -54.7 NC_002512.2 + 42968 0.72 0.777554
Target:  5'- cCACgGGCAgguaGACgcgCUGGuuCCCGACGAGg -3'
miRNA:   3'- aGUGgCUGU----UUGa--GACC--GGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 45245 0.69 0.907867
Target:  5'- gCGCCcGCGGACUCgccgucGGCCgcCGGCGGGg -3'
miRNA:   3'- aGUGGcUGUUUGAGa-----CCGG--GCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 50874 0.7 0.882246
Target:  5'- cUACUGGCGGGaaaggugCUGGCCCGuuCGAGg -3'
miRNA:   3'- aGUGGCUGUUUga-----GACCGGGCu-GCUC- -5'
8976 5' -54.7 NC_002512.2 + 54096 0.66 0.972207
Target:  5'- aCGCCGcCAAGCUgUcGGCCUG-CGAc -3'
miRNA:   3'- aGUGGCuGUUUGAgA-CCGGGCuGCUc -5'
8976 5' -54.7 NC_002512.2 + 55543 0.67 0.966413
Target:  5'- aUC-CCGGCGGACgagGGCgCGGCGGa -3'
miRNA:   3'- -AGuGGCUGUUUGagaCCGgGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 62141 0.71 0.83759
Target:  5'- gUCGCCGACGcccggcAGCUCcucgccccGCUCGACGAGa -3'
miRNA:   3'- -AGUGGCUGU------UUGAGac------CGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 64221 0.66 0.979493
Target:  5'- gUCAUCGAgGAcCUC-GGCCUG-CGGGa -3'
miRNA:   3'- -AGUGGCUgUUuGAGaCCGGGCuGCUC- -5'
8976 5' -54.7 NC_002512.2 + 70971 0.67 0.969408
Target:  5'- cCGCCGAagccguACUC-GGCCgCGAcCGAGg -3'
miRNA:   3'- aGUGGCUguu---UGAGaCCGG-GCU-GCUC- -5'
8976 5' -54.7 NC_002512.2 + 71654 0.7 0.875303
Target:  5'- cCACCGAgcCGAACUUgggcGGCCCGGacagGAGg -3'
miRNA:   3'- aGUGGCU--GUUUGAGa---CCGGGCUg---CUC- -5'
8976 5' -54.7 NC_002512.2 + 72874 0.66 0.972207
Target:  5'- gUCGCCGuuguCGcggGGCUCgGGCCCGaaGCGGc -3'
miRNA:   3'- -AGUGGCu---GU---UUGAGaCCGGGC--UGCUc -5'
8976 5' -54.7 NC_002512.2 + 74417 0.68 0.939573
Target:  5'- -uGCCGACGAACUCgcGG-UCGACGGu -3'
miRNA:   3'- agUGGCUGUUUGAGa-CCgGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 77091 0.69 0.901791
Target:  5'- gUCGCCG-CGGAC-CUccgagacggaGGCCCGGCGGu -3'
miRNA:   3'- -AGUGGCuGUUUGaGA----------CCGGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 80474 0.67 0.963218
Target:  5'- cCGCCG-CGGucccCUCgcGGCCCGuCGAGg -3'
miRNA:   3'- aGUGGCuGUUu---GAGa-CCGGGCuGCUC- -5'
8976 5' -54.7 NC_002512.2 + 83137 0.66 0.977243
Target:  5'- gUCcCCGucguCGAGgUCgucgGGCCCGGCGGc -3'
miRNA:   3'- -AGuGGCu---GUUUgAGa---CCGGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 83816 0.68 0.944064
Target:  5'- gCGCCGGCGgcggcGGCUCcgGGCCCGGg--- -3'
miRNA:   3'- aGUGGCUGU-----UUGAGa-CCGGGCUgcuc -5'
8976 5' -54.7 NC_002512.2 + 84340 0.7 0.882246
Target:  5'- gUCGCCGcguccucgaGCGGgauGCUCcGGCCCGACGc- -3'
miRNA:   3'- -AGUGGC---------UGUU---UGAGaCCGGGCUGCuc -5'
8976 5' -54.7 NC_002512.2 + 87765 0.7 0.868153
Target:  5'- -aGCCGAgaGAGCUCcGGCcgCCGACGGGu -3'
miRNA:   3'- agUGGCUg-UUUGAGaCCG--GGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 89630 0.69 0.901171
Target:  5'- gCGCCGA-AGACUC-GGCCacgcagaCGACGAGg -3'
miRNA:   3'- aGUGGCUgUUUGAGaCCGG-------GCUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.