miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8976 5' -54.7 NC_002512.2 + 50874 0.7 0.882246
Target:  5'- cUACUGGCGGGaaaggugCUGGCCCGuuCGAGg -3'
miRNA:   3'- aGUGGCUGUUUga-----GACCGGGCu-GCUC- -5'
8976 5' -54.7 NC_002512.2 + 84340 0.7 0.882246
Target:  5'- gUCGCCGcguccucgaGCGGgauGCUCcGGCCCGACGc- -3'
miRNA:   3'- -AGUGGC---------UGUU---UGAGaCCGGGCUGCuc -5'
8976 5' -54.7 NC_002512.2 + 124630 0.7 0.895494
Target:  5'- gUCGCUGGCc--CUgUGGCCCGAgaaGAGg -3'
miRNA:   3'- -AGUGGCUGuuuGAgACCGGGCUg--CUC- -5'
8976 5' -54.7 NC_002512.2 + 112478 0.7 0.895494
Target:  5'- gCACCGACuccAGCgugugcgCgcaGCCCGACGAGu -3'
miRNA:   3'- aGUGGCUGu--UUGa------Gac-CGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 93176 0.7 0.895494
Target:  5'- aUCACCGACAGGa--UGG-CgGACGAGa -3'
miRNA:   3'- -AGUGGCUGUUUgagACCgGgCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 105136 0.7 0.895494
Target:  5'- -gGCCGACGAcgGCUCcacgaacaUGGCCgaguCGGCGGGg -3'
miRNA:   3'- agUGGCUGUU--UGAG--------ACCGG----GCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 89630 0.69 0.901171
Target:  5'- gCGCCGA-AGACUC-GGCCacgcagaCGACGAGg -3'
miRNA:   3'- aGUGGCUgUUUGAGaCCGG-------GCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 95125 0.69 0.901791
Target:  5'- cCGCCGACGAAC-CggacGGuccgcCCCGGCGGGu -3'
miRNA:   3'- aGUGGCUGUUUGaGa---CC-----GGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 145769 0.69 0.901791
Target:  5'- cUCACCGAgAcGCUgUGGCCgCGG-GAGg -3'
miRNA:   3'- -AGUGGCUgUuUGAgACCGG-GCUgCUC- -5'
8976 5' -54.7 NC_002512.2 + 127543 0.69 0.901791
Target:  5'- -gACCGACGcccggacccGGCUCgucguccgggaGGCCCGACGGa -3'
miRNA:   3'- agUGGCUGU---------UUGAGa----------CCGGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 77091 0.69 0.901791
Target:  5'- gUCGCCG-CGGAC-CUccgagacggaGGCCCGGCGGu -3'
miRNA:   3'- -AGUGGCuGUUUGaGA----------CCGGGCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 7120 0.69 0.901791
Target:  5'- -aGCCGu---GCUCguUGGCCCaGACGAGg -3'
miRNA:   3'- agUGGCuguuUGAG--ACCGGG-CUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 227100 0.69 0.907867
Target:  5'- cCGCCGGCcGGgUCgGGCUCaGACGGGg -3'
miRNA:   3'- aGUGGCUGuUUgAGaCCGGG-CUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 91902 0.69 0.907867
Target:  5'- gCGCaCGGCccGCUCgGGCCCGGCa-- -3'
miRNA:   3'- aGUG-GCUGuuUGAGaCCGGGCUGcuc -5'
8976 5' -54.7 NC_002512.2 + 125856 0.69 0.907867
Target:  5'- gCugCGguACuccCUCUGGUCCGGCGGGc -3'
miRNA:   3'- aGugGC--UGuuuGAGACCGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 45245 0.69 0.907867
Target:  5'- gCGCCcGCGGACUCgccgucGGCCgcCGGCGGGg -3'
miRNA:   3'- aGUGGcUGUUUGAGa-----CCGG--GCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 110376 0.69 0.913718
Target:  5'- gCACaCGGCGGAUUUgucGUCCGGCGAGa -3'
miRNA:   3'- aGUG-GCUGUUUGAGac-CGGGCUGCUC- -5'
8976 5' -54.7 NC_002512.2 + 222377 0.69 0.913718
Target:  5'- uUCcCCGGCGGGCUCUGGCUCcucAUGGa -3'
miRNA:   3'- -AGuGGCUGUUUGAGACCGGGc--UGCUc -5'
8976 5' -54.7 NC_002512.2 + 10570 0.69 0.913718
Target:  5'- aCGCCGACGcuCUCcccgUGGCCgcggaCGACGAa -3'
miRNA:   3'- aGUGGCUGUuuGAG----ACCGG-----GCUGCUc -5'
8976 5' -54.7 NC_002512.2 + 116931 0.69 0.913718
Target:  5'- aCGcCCGAC-GACUCggGGCUCGACcGGGg -3'
miRNA:   3'- aGU-GGCUGuUUGAGa-CCGGGCUG-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.